View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20009_low_8 (Length: 484)
Name: NF20009_low_8
Description: NF20009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20009_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 41481305 - 41481764
Alignment:
| Q |
17 |
attaacaactttccaatactttattctctctccctaacaacctctaactactctcttcttcttcttcctccatagttcagattgcttacgatgcaagaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481305 |
attaacaactttccaatactttattctctctccctaacaacctctaactactctcttcttcttcttcctccatagttcagattgcttacgatgcaagaaa |
41481404 |
T |
|
| Q |
117 |
caaaagctacgctaatagaaacaaggacatgaagattggggattacatnnnnnnnngtgtttcaagattatgttgatagagattggttatgtgaactaaa |
216 |
Q |
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| T |
41481405 |
caaaagctacgctaatagaaacaaggacatgaagattggggattgcataaaaaaa-gtgtttcaagattatgttgatagagattggttatgtgaactaaa |
41481503 |
T |
|
| Q |
217 |
tcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaa---tatgcgtccctctatattttactccacttgttagaattttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
41481504 |
tcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaagaatatgtgtccctctatattttactccacttgttagaattttt |
41481603 |
T |
|
| Q |
314 |
tcaatgtattctacattttgttggcttatgtgattgttgttagtcactaaatttaatttgggcaacaattaaaaggtatttcgnnnnnnngccaacagga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41481604 |
tcaatgtattctacattttgttggcttatgtgattgttgttagtcaataaattcaatttgggcaacaattaaaaggtatatcgaaaaaaagccaacagga |
41481703 |
T |
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| Q |
414 |
tttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactctgtg |
474 |
Q |
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| T |
41481704 |
tttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactctgtg |
41481764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 41645409 - 41645352
Alignment:
| Q |
23 |
aactttccaatactttattctctctccctaacaacctctaactactctcttcttcttc |
80 |
Q |
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|||||| ||||||| |||| |||||||||||||||||||||||||| || |||||||| |
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| T |
41645409 |
aacttttcaatactctattatctctccctaacaacctctaactactttcatcttcttc |
41645352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 12103418 - 12103348
Alignment:
| Q |
19 |
taacaactttccaatactttattctctctccctaacaacctctaactactctcttcttcttcttcctccat |
89 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||||||||||| |
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| T |
12103418 |
taacaactttccaatactctattctctctctgtaacatcctctaactactttcatcttcttcttcctccat |
12103348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 26628655 - 26628585
Alignment:
| Q |
19 |
taacaactttccaatactttattctctctccctaacaacctctaactactctcttcttcttcttcctccat |
89 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||| ||||||| || || ||||||||||||||||| |
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| T |
26628655 |
taacaactttccaatactctcttctctctccataacaaactctaacctctttcatcttcttcttcctccat |
26628585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 29982615 - 29982555
Alignment:
| Q |
23 |
aactttccaatactttattctctctccctaacaacctctaactactctcttcttcttcttc |
83 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| ||| ||| ||| ||||||||||| |
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| T |
29982615 |
aactttccaatactctattctctctccataacaacctgtaattaccctcctcttcttcttc |
29982555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 10878550 - 10878490
Alignment:
| Q |
19 |
taacaactttccaatactttattctctctccctaacaacctctaactactctcttcttcttc |
80 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
10878550 |
taacaactttccaatacttc-ttctctctctataacaacctctaattactctcttcttcttc |
10878490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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