View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_high_18 (Length: 250)
Name: NF20010_high_18
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 40777318 - 40777560
Alignment:
| Q |
11 |
atgaatggtctaaccaacttaaccaagttatattttcaaacaaaagagnnnnnnnnnn---------gatgaattaagttgagaaaataaagaatgtgcc |
101 |
Q |
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| T |
40777318 |
atgaatggtctaaccaacttaaccaagttatgttttcaaacaaaagagagaaaaaagaagaaaaaaagatgaattaagttgagaaaataaataatgtgcc |
40777417 |
T |
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| Q |
102 |
acaatcatggcattgctcactcacaaccttactattactaatagaaatgtctatttcatttcaaatttagaaaataagaatcttacaatgcatattactc |
201 |
Q |
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| T |
40777418 |
ataatcatggcattgctcactcacaaccttac------taatagaaatgtctatttcatttcaaatttagaaaataagaatcttacaatgcatattactg |
40777511 |
T |
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| Q |
202 |
gattaaaataaaactaaaattattataattcaaattaaatatgattacc |
250 |
Q |
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| T |
40777512 |
gattaaaataaaactaaaattattataattcaaattaaatatgattacc |
40777560 |
T |
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