View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_high_4 (Length: 457)
Name: NF20010_high_4
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 8102535 - 8102104
Alignment:
| Q |
10 |
atgaacaaagaaaaggtgaaagctgtgaaagtgttgttggtttgtggaagagtgagtgttgttg---gaaaagaaagaaaacagtagtactacagaaact |
106 |
Q |
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| T |
8102535 |
atgaacaaagaaaaggtgaaagctgtgaaagtgttgttggtttgtggaagagtgagtgttgttgttggaaaagaaagagaacagtagtactacagaaact |
8102436 |
T |
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| Q |
107 |
aacagtaacagcttcttccctgtcactgatcccattcattcgtcagaacaacactgttttggaaaagaaaaagtctaacagaaattttgttttacacacg |
206 |
Q |
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| T |
8102435 |
aacagtaacagcttcttccctgtcactgatcccattcattcgtcagaacaacactgttttggaaaagaaaaagtctaacagaaattttgttttacacacg |
8102336 |
T |
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| Q |
207 |
caatctatattctcttccaaaactttctcggtaccttcacttatctttttcagaagtttcagtaatatatgaaaatatgtatatagtcatagatcaaaag |
306 |
Q |
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| T |
8102335 |
caatctatattctcttccaaaactttctcggtaccttcacttatctttttcagaagtttcagtaatatatgaaaatatgtatatagtcatagatcaaaag |
8102236 |
T |
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| Q |
307 |
tgacaacacaataaaagacaagaataataggaacaaaatgaacatacaatataatatacctgctgaagggagagtgagtgaagtgtttgtaggtaaacga |
406 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8102235 |
tgacaacacaataaaagacaacaataataggaacaaaatgaacatacgatataatatacctgctgaagggagagtgagtgaacggtttgtaggtaaacga |
8102136 |
T |
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| Q |
407 |
gtgcaagctaaagaggaattgttattgttaag |
438 |
Q |
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| T |
8102135 |
gtgcaagctaaagaggaattgttattgttaag |
8102104 |
T |
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