View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20010_low_1 (Length: 637)

Name: NF20010_low_1
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20010_low_1
NF20010_low_1
[»] chr2 (11 HSPs)
chr2 (1-637)||(40894711-40895346)
chr2 (417-540)||(31620525-31620648)
chr2 (417-570)||(35306017-35306170)
chr2 (416-567)||(35298555-35298706)
chr2 (417-610)||(36669023-36669216)
chr2 (417-521)||(31622062-31622166)
chr2 (440-540)||(36666225-36666325)
chr2 (417-506)||(4753528-4753617)
chr2 (420-478)||(4755036-4755094)
chr2 (417-478)||(31621112-31621173)
chr2 (429-478)||(36666795-36666844)
[»] chr3 (11 HSPs)
chr3 (417-637)||(37464829-37465049)
chr3 (417-540)||(11137912-11138035)
chr3 (415-502)||(19801784-19801871)
chr3 (438-552)||(37463700-37463814)
chr3 (416-565)||(18912547-18912696)
chr3 (414-542)||(9099557-9099685)
chr3 (417-498)||(20997633-20997714)
chr3 (417-543)||(18939788-18939915)
chr3 (415-462)||(36163381-36163428)
chr3 (415-496)||(20998993-20999074)
chr3 (417-462)||(36164592-36164637)
[»] chr7 (10 HSPs)
chr7 (419-606)||(42537718-42537905)
chr7 (417-596)||(45291835-45292014)
chr7 (417-596)||(45295960-45296139)
chr7 (418-580)||(40601718-40601882)
chr7 (417-533)||(38516620-38516736)
chr7 (426-556)||(41740948-41741080)
chr7 (417-580)||(40600711-40600876)
chr7 (417-505)||(41739622-41739710)
chr7 (417-483)||(38517746-38517812)
chr7 (490-567)||(33061630-33061707)
[»] chr4 (10 HSPs)
chr4 (420-564)||(8480862-8481006)
chr4 (417-565)||(41774644-41774792)
chr4 (417-505)||(30829927-30830015)
chr4 (426-610)||(8479660-8479845)
chr4 (417-558)||(52190289-52190430)
chr4 (417-521)||(52189186-52189290)
chr4 (417-556)||(31410533-31410671)
chr4 (417-567)||(41780164-41780314)
chr4 (430-605)||(31409326-31409498)
chr4 (421-533)||(23545294-23545406)
[»] scaffold0115 (4 HSPs)
scaffold0115 (417-610)||(4336-4529)
scaffold0115 (417-610)||(12076-12269)
scaffold0115 (417-564)||(5994-6141)
scaffold0115 (417-564)||(13734-13881)
[»] chr6 (8 HSPs)
chr6 (417-596)||(9448648-9448827)
chr6 (417-580)||(227121-227285)
chr6 (417-580)||(226121-226284)
chr6 (416-506)||(18191745-18191835)
chr6 (417-462)||(11020404-11020449)
chr6 (418-462)||(11020178-11020222)
chr6 (417-461)||(18193022-18193066)
chr6 (414-462)||(31855648-31855696)
[»] chr1 (10 HSPs)
chr1 (414-567)||(49919612-49919765)
chr1 (417-611)||(26529508-26529701)
chr1 (416-541)||(26531027-26531152)
chr1 (417-610)||(36573962-36574155)
chr1 (417-540)||(36575475-36575598)
chr1 (417-478)||(36574956-36575017)
chr1 (417-533)||(35062564-35062680)
chr1 (417-504)||(35063596-35063683)
chr1 (417-478)||(26530502-26530563)
chr1 (417-499)||(49917389-49917470)
[»] chr5 (4 HSPs)
chr5 (418-610)||(16727813-16728005)
chr5 (416-505)||(38921454-38921543)
chr5 (420-533)||(35967351-35967464)
chr5 (417-504)||(35968670-35968757)
[»] chr8 (11 HSPs)
chr8 (417-580)||(5005708-5005871)
chr8 (416-567)||(5014735-5014886)
chr8 (418-540)||(3872224-3872346)
chr8 (416-521)||(17863465-17863570)
chr8 (417-478)||(12887725-12887786)
chr8 (417-502)||(37241028-37241113)
chr8 (417-521)||(17864672-17864776)
chr8 (417-540)||(3870768-3870891)
chr8 (417-506)||(32565606-32565695)
chr8 (417-470)||(12888252-12888305)
chr8 (415-455)||(12887022-12887062)


Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Complemental strand, 40895346 - 40894711
Alignment:
Q  1 agtaggtgatattgtagcatgatgttgtcttcaagttggtgagtacgtctttaataactttcccactatgcatgcttctacgatagatgttgcctaccat 100  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40895346 agtaggtgatattgtagcatgttgttgtcttcaagctggtgagtacgtctt-aataactttcccactatgcatgcttctacgatagatgttgcctaccat 40895248  T
Q  101 ccagcactagcaaaaaacgccaaaatccaattaagtgttttaaa-atataacaactagtaatatatttggacacatc--atatttgtcacattcattcat 197  Q
    ||||||||||||||||||||||||||||||||||||| |   |  ||||  |  |||||||||||||||||||||||  |||||||||||||||||||||    
T  40895247 ccagcactagcaaaaaacgccaaaatccaattaagtggtaacatcatatttcttctagtaatatatttggacacatctcatatttgtcacattcattcat 40895148  T
Q  198 tttacacatgatttattcttatattgggttaatgaatgaannnnnnngctttgccaaagtcttaatttcttcttaacgataacatccactcgcttcaatg 297  Q
    |||||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40895147 tttacacatgatttattcttatattgggttaatgaat----ttttttgcttagccaaagtcttaatttcttcttaacgataacatccactcgcttcaatg 40895052  T
Q  298 gtaagtggtaacatttgcttctttccacctattattatgcatcagtcatacttagtattaagaacaaccgctatatttatgctatgagagttctcaaaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40895051 gtaagtggtaacatttgcttctttccacctattattatgcatcagtcatacttagtattaagaacaaccgctagatttatgctatgagagttctcaaaaa 40894952  T
Q  398 ggcttagcatccattctttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactc 497  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40894951 ggcttagcatccattctttgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactc 40894852  T
Q  498 ccccaatgtcttttccgttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattg 597  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40894851 ccccaatgtcttttccgttagtcattcacgtccaaaacgttaactgggcgttaactatgctaatctggccgctagacttgccacttcagttgctgtattg 40894752  T
Q  598 gccttccacgtaggcaaatgactaaattgat-gatgtccat 637  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40894751 gccttccacgtaggcaaatgactaaattgatggatgtccat 40894711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 31620525 - 31620648
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||| || |||||  |||||||| |||||||| | |||||||| |||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgtt 31620624  T
Q  517 agtcattcacgtccaaagcgttaa 540  Q
    |||||| || ||||||| ||||||    
T  31620625 agtcatacaagtccaaaacgttaa 31620648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 417 - 570
Target Start/End: Complemental strand, 35306170 - 35306017
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||| | ||||||||||||||||||||||||| | | ||||||| |||||  |||||||  ||||||||||| || |||| ||| |||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctgtt 35306071  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgct 570  Q
    |||||||| | |||||| ||||||||| ||||||||  |||| |||||| ||||    
T  35306070 agtcattctcatccaaaacgttaactgagcgttaacattgctgatctggacgct 35306017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 416 - 567
Target Start/End: Original strand, 35298555 - 35298706
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||||| || |||| || |||    
T  35298555 tgagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtctctttcgt 35298654  T
Q  516 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 567  Q
    ||||||||| | |||||| ||||||||| ||||||||  |||| ||||||||    
T  35298655 tagtcattcccatccaaaacgttaactgagcgttaacattgctgatctggcc 35298706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 610
Target Start/End: Complemental strand, 36669216 - 36669023
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| || |||||||||| |||||||| |||||||||||||  ||||||||| |||||  |||| |||||||||||||| |||||||| ||| |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
    |||||    | |||||| |||||||| |   ||||| ||| | || ||  || || || ||||||||||| |||||||||||| ||||| ||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaacggtgatgatgtgttcgttacacatgccacttcagctgctgtattggctttccatgtag 36669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 417 - 521
Target Start/End: Complemental strand, 31622166 - 31622062
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| || |||||| ||||||||||||||||||| |||||   ||||||||| |||||  |||| |||||||||||||| |||||| | |||||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  517 agtca 521  Q
     ||||    
T  31622066 tgtca 31622062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 540
Target Start/End: Original strand, 36666225 - 36666325
Alignment:
Q  440 tgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgtta 539  Q
    |||||||||||||||| || ||| || |  ||| |||||  |||||||||||||||| || |||||||| ||||||||||||| ||||| |||| |||||    
T  36666225 tgaaagtgtacctcgcaattagacacatttctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcatacacgttcaaaacgtta 36666324  T
Q  540 a 540  Q
    |    
T  36666325 a 36666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 4753528 - 4753617
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 506  Q
    |||||||| ||| ||||| |||||||||||||  ||||||||||||   |||||||||||||| ||| |||  |||||||||| ||||||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgt 4753617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 4755094 - 4755036
Alignment:
Q  420 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    ||||| ||||||||| || |||||||||| ||||||||||||| |||||||| ||||||    
T  4755094 taaaccctcatttgggtctctgaaagtgtccctcgctatcagacacgtccctagatcaa 4755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 31621173 - 31621112
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    ||||||||  |||||||| ||||| ||||||||||||||||||| | | |||||||||||||    
T  31621173 gagtaaaccttcatttgggtccctaaaagtgtacctcgctatcaaacatgtccctggatcaa 31621112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 36666844 - 36666795
Alignment:
Q  429 atttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    |||||| ||||| ||||||||||||||||||| ||| |||||||||||||    
T  36666844 atttgggtccctaaaagtgtacctcgctatcaaatatgtccctggatcaa 36666795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 417 - 637
Target Start/End: Complemental strand, 37465049 - 37464829
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| || |||||| |||||||||||||  ||||||||||| ||| ||||| |||||||||||| ||| ||||||||||  ||||||| |||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtt 37464950  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaat 616  Q
     |||||||||||||||| |||||||||  |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| ||||||  | |||||     
T  37464949 tgtcattcacgtccaaaacgttaactgaacgttaattgtgttgatctggctgctagacttgccacttcagttgctgtattggcattccacacatgcaaa- 37464851  T
Q  617 gactaaattgat-gatgtccat 637  Q
    |||||||||||| |||||||||    
T  37464850 gactaaattgatggatgtccat 37464829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 11137912 - 11138035
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| || || ||| ||||||||||||||||| || |||||||||||   |||||||| |||||||||| |||||||| || | ||    
T  11137912 gagtaaaccctcatttggttctctaaaaatgtacctcgctatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatgtctgtttcttt 11138011  T
Q  517 agtcattcacgtccaaagcgttaa 540  Q
    ||| || |||||||||| ||||||    
T  11138012 agttatacacgtccaaaacgttaa 11138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 415 - 502
Target Start/End: Original strand, 19801784 - 19801871
Alignment:
Q  415 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccccca 502  Q
    |||||||||| ||||||  | |||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||    
T  19801784 ttgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca 19801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 552
Target Start/End: Original strand, 37463700 - 37463814
Alignment:
Q  438 cctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgt 537  Q
    |||||||||||  ||||||||||   ||||||||||||||||||||||| | ||||||||  | ||||||| |||| ||||||||| ||||||||| |||    
T  37463700 cctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccattagtcatttacgtccaaaacgt 37463799  T
Q  538 taactgggcgttaac 552  Q
    ||||| || ||||||    
T  37463800 taacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 416 - 565
Target Start/End: Original strand, 18912547 - 18912696
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||||| ||||||||| |||||||||||||||||| |||| |   | ||||||| |||||  ||||| |  ||||||||||  || |||| ||||||    
T  18912547 tgagtaaaccctcatttgggtccctgaaagtgtacctcactattaaccatgtccctgaatcaagaaaacgcaaaaaaaactccctgaaagtctcttccgt 18912646  T
Q  516 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctgg 565  Q
    ||||||||| | |||||| ||||||||| ||||||||  |||| ||||||    
T  18912647 tagtcattcccatccaaaacgttaactgagcgttaacactgctgatctgg 18912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 9099557 - 9099685
Alignment:
Q  414 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 513  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||   || |||||| ||||||||||||||| ||||||||   ||||||   ||||    
T  9099557 tttgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttcc 9099656  T
Q  514 gttagtcattcacgtccaaagcgttaact 542  Q
    ||||||||   | ||||||| ||||||||    
T  9099657 gttagtcaaataagtccaaaacgttaact 9099685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 20997633 - 20997714
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcc 498  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||   || |||| |||||||| |||| ||| |||||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactcc 20997714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 18939915 - 18939788
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||   ||||||||   ||||  ||||| |  | ||||||||| || |||| |||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaaccacgtccctaagtcaagaaaacgcaaaacaaactccccgaaagtctcttccgtt 18939816  T
Q  517 agtcatt-cacgtccaaagcgttaactg 543  Q
    ||||||| | | |||||| |||||||||    
T  18939815 agtcattacccatccaaaacgttaactg 18939788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 462
Target Start/End: Original strand, 36163381 - 36163428
Alignment:
Q  415 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 462  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||    
T  36163381 ttgagtaaaccttcatttggatccctgaaagtgtccctcgctatcaga 36163428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 496
Target Start/End: Complemental strand, 20999074 - 20998993
Alignment:
Q  415 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaact 496  Q
    |||||||||  ||||||| ||||||||||||||||| | | ||||||| || || ||| |||||||||| ||| ||||||||    
T  20999074 ttgagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaact 20998993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 36164637 - 36164592
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 462  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  36164637 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaga 36164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 419 - 606
Target Start/End: Original strand, 42537718 - 42537905
Alignment:
Q  419 gtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttag 518  Q
    |||||| |||| |||| |||||||||||||  ||||||||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttg 42537817  T
Q  519 tcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccac 606  Q
    ||||||||||||||| |||||| ||  |||||| |||| | ||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  42537818 tcattcacgtccaaaacgttaattgaacgttaattgtgttgatctggctgctagacttgccacttcagctgctgtattggcattccac 42537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 417 - 596
Target Start/End: Complemental strand, 45292014 - 45291835
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||  || |||||| ||||| ||| ||||| |||||||||| ||| |||| |||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45291915  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 596  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  45291914 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 45291835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 596
Target Start/End: Complemental strand, 45296139 - 45295960
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||  || ||| |||||||| ||| ||||| |||||||||| ||| |||| |||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45296040  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 596  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  45296039 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 45295960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 418 - 580
Target Start/End: Complemental strand, 40601882 - 40601718
Alignment:
Q  418 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg--aactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||  || ||||| || ||| ||||||  ||  ||||||||| | || |||| ||||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacgcaaaaaaaaaactcctcgaaagtctcttccgt 40601783  T
Q  516 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 580  Q
    ||||||||| | |||||| ||||||||| ||||||||| |||| |||||| |||| | |||||||    
T  40601782 tagtcattcccatccaaaacgttaactgagcgttaactctgctgatctggacgctggtcttgcca 40601718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 417 - 533
Target Start/End: Original strand, 38516620 - 38516736
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||| || |||||||||||| ||| | ||| |||||||||| ||| || | | |||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaaagtttctcccgtt 38516719  T
Q  517 agtcattcacgtccaaa 533  Q
    |||||||||| ||||||    
T  38516720 agtcattcacatccaaa 38516736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 426 - 556
Target Start/End: Complemental strand, 41741080 - 41740948
Alignment:
Q  426 ctcatttggatccctgaaagtgtacctcgct--atcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcatt 523  Q
    ||||||||| |||||||||||  |||| |||  ||||| | |||||| |||||||| |||| ||| ||||||||||||||| | | |||||||||||||     
T  41741080 ctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagtcatc 41740981  T
Q  524 cacgtccaaagcgttaactgggcgttaactgtg 556  Q
    |||||||||| |||||||||| |||||| ||||    
T  41740980 cacgtccaaaacgttaactggccgttaagtgtg 41740948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 417 - 580
Target Start/End: Original strand, 40600711 - 40600876
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg--aactaaaaactcccccaatgtcttttccg 514  Q
    |||||||| ||||||||| ||||||||| ||| |||| |||||||  || ||| |||| ||| |||||   ||  ||||||||||| || |||| |||||    
T  40600711 gagtaaaccctcatttgggtccctgaaaatgtgcctctctatcaggcacatccttggaacaaggaaacacaaaaaaaaaactccccgaaagtctcttccg 40600810  T
Q  515 ttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 580  Q
    |||||||||| |||||||| ||||||||| |||||| || |||| |||||| |||| | |||||||    
T  40600811 ttagtcattcccgtccaaaacgttaactgagcgttagctctgctgatctggacgctggtcttgcca 40600876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 41739622 - 41739710
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 505  Q
    |||||||| ||||||||| | ||||||||| |  |||||||||||  || ||||| |||||||||||||||| ||||||||||||||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatg 41739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 38517812 - 38517746
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaa 483  Q
    |||||||| ||||||||  ||||| ||||| ||| ||||||||||| ||||||||||||||| ||||    
T  38517812 gagtaaaccctcatttgagtccctaaaagtatacatcgctatcagacacgtccctggatcaacgaaa 38517746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 567
Target Start/End: Original strand, 33061630 - 33061707
Alignment:
Q  490 aaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 567  Q
    |||||||| || || |||| |||||||||||||||   |||||| |||||||||||| |||||  |||| ||||||||    
T  33061630 aaaaactctccgaaagtctcttccgttagtcattcctatccaaaacgttaactgggcattaacattgctgatctggcc 33061707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 420 - 564
Target Start/End: Complemental strand, 8481006 - 8480862
Alignment:
Q  420 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagt 519  Q
    ||||||||||||||  |||||||||||||| |||||||||||  |||||||||||||||||||||| || |||||||||||||| |||| ||||||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  520 cattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 564  Q
    ||||| | |||||| |||||||||  ||||||||||||| |||||    
T  8480906 cattcccatccaaaacgttaactgatcgttaactgtgctgatctg 8480862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 417 - 565
Target Start/End: Original strand, 41774644 - 41774792
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||||||||||||| |||||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||||| || || | |||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtgtcttccgtt 41774743  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctgg 565  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| ||||||    
T  41774744 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctgg 41774792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 30829927 - 30830015
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 505  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||  || ||||| |||||||||||||||| ||||||||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatg 30830015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 610
Target Start/End: Original strand, 8479660 - 8479845
Alignment:
Q  426 ctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaa-ctcccccaatgtcttttccgttagtcattc 524  Q
    ||||||||| |||||||||||||| || ||||||||  |||| |||||||||||  |||| || ||||| ||||||||| |||| ||||||||||||||     
T  8479660 ctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaatacaacgcaccaaaaacctcccccaaagtctcttccgttagtcattt 8479759  T
Q  525 acgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
     | ||||||  ||||||||  | ||||| ||  | || || ||| || || |||||| ||||||| |||||||| |||||||||||    
T  8479760 ccatccaaaatgttaactgatcattaacggtaatgatgtgtccgttacacatgccacctcagttgttgtattggtcttccacgtag 8479845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 558
Target Start/End: Complemental strand, 52190430 - 52190289
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| |||||||||||| | |||||||||||  |  ||| ||||||||| |||||||| ||||||||||||||||||| ||  |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgct 558  Q
    |||||    | |||||| |||||||| || ||||| ||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaaatgtgct 52190289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 521
Target Start/End: Original strand, 52189186 - 52189290
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||  || ||||||||||||| |||| ||  |||||||| | |||||| | |||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  517 agtca 521  Q
    |||||    
T  52189286 agtca 52189290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 417 - 556
Target Start/End: Complemental strand, 31410671 - 31410533
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| || |||| | | |||||||||| |||||||||||||| |||| |||| |||||| |||||||  ||||||| || |||| ||| |||||||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaact-cctcaatatctgttccgtt 31410573  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtg 556  Q
    |||||  |||||||||| |||||||||  |||||| ||||    
T  31410572 agtcacacacgtccaaaacgttaactgaacgttaagtgtg 31410533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 417 - 567
Target Start/End: Complemental strand, 41780314 - 41780164
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| || ||||||||||||||||||||||   |||| |||| |||||  ||||| |  ||||||||| | || || | |||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 41780215  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 567  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| ||||||||    
T  41780214 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctggcc 41780164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 605
Target Start/End: Original strand, 31409326 - 31409498
Alignment:
Q  430 tttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtc 529  Q
    ||||| |||||||||||| ||||||||||||   |||||| ||||||||  |||||||| |||||||||| ||   ||| ||||||||||||    | ||    
T  31409326 tttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatc 31409422  T
Q  530 caaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttcca 605  Q
    |||| |||||||| || |||||| ||||| || || | | || |||||||||||||| || ||| |||||||||||    
T  31409423 caaaacgttaacttggtgttaacggtgctgatgtgtcggttatacttgccacttcagctgttgtgttggccttcca 31409498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 533
Target Start/End: Complemental strand, 23545406 - 23545294
Alignment:
Q  421 aaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtc 520  Q
    |||| ||||||||  ||| ||||||||||||| ||||||||| ||||| ||| |||||  |||||||| |||||||||  |||||||| || | ||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtttcattagtc 23545307  T
Q  521 attcacgtccaaa 533  Q
    || ||||||||||    
T  23545306 atacacgtccaaa 23545294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 417 - 610
Target Start/End: Original strand, 4336 - 4529
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||| ||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||||| || |||||||||||||| |||| |||| ||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 4435  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
    |||||||| | |||||| |||||| ||  ||||||| ||||| || || ||| || || |||||| |||||||||||||||||||||| |||||    
T  4436 agtcattcccatccaaaacgttaattgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtag 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 417 - 610
Target Start/End: Original strand, 12076 - 12269
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||| ||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||||| || |||||||||||||| |||| |||| ||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 12175  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
    |||||||| | |||||| |||||| ||  ||||||| ||||| || || ||| || || |||||| |||||||||||||||||||||| |||||    
T  12176 agtcattcccatccaaaacgttaattgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtag 12269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 6141 - 5994
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||   ||||||| ||| ||||||||| || ||||||||||||||  ||| ||| |||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 6042  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 564  Q
    |||||||| |||||||| | |||||||  | ||||||||||| |||||    
T  6041 agtcattcccgtccaaaacattaactgatcattaactgtgctgatctg 5994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 13881 - 13734
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||   ||||||| ||| ||||||||| || ||||||||||||||  ||| ||| |||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 13782  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 564  Q
    |||||||| |||||||| | |||||||  | ||||||||||| |||||    
T  13781 agtcattcccgtccaaaacattaactgatcattaactgtgctgatctg 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 417 - 596
Target Start/End: Complemental strand, 9448827 - 9448648
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||| ||| |||| |||| ||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttccttt 9448728  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 596  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  9448727 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 9448648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 580
Target Start/End: Complemental strand, 227285 - 227121
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg-aactaaaaactcccccaatgtcttttccgt 515  Q
    |||||||| ||||||||| || ||||||||||  ||| |||| ||  || ||| |||| ||| |||||| ||  ||||||||||| || |||||||||||    
T  227285 gagtaaaccctcatttgggtctctgaaagtgtgtctcactattaggcacatccatggaacaaggaaacgcaaaaaaaaactccccgaaagtcttttccgt 227186  T
Q  516 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 580  Q
    ||||||||| | |||||| ||||||||| | ||||||| |||| |||||| |||| | |||||||    
T  227185 tagtcattcccatccaaaacgttaactgagtgttaactctgctgatctggacgctggtcttgcca 227121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 580
Target Start/End: Original strand, 226121 - 226284
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||| ||||||||| ||||||||||||  || ||| |||| ||| |||||| |  ||||||||||  || |||| ||| |||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacatccatggaacaaggaaacgcaaaaaaaactccctgaaagtctcttctgtt 226220  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 580  Q
    | |||||| ||| || | |||||||||  |||||||| |||| || ||| |||| | |||||||    
T  226221 aatcattcccgttcagaacgttaactgaacgttaactctgctgatttggacgctggtcttgcca 226284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 506
Target Start/End: Original strand, 18191745 - 18191835
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 506  Q
    ||||||||| ||||||||| ||||||||||||| || ||||||||||   ||||||  ||||||  || |||  |||||||||||||||||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgt 18191835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 11020449 - 11020404
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 462  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaga 11020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 11020178 - 11020222
Alignment:
Q  418 agtaaactctcatttggatccctgaaagtgtacctcgctatcaga 462  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||    
T  11020178 agtaaactctcatttgggtccctgaaagtgtccctcactatcaga 11020222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 18193066 - 18193022
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcag 461  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||    
T  18193066 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcag 18193022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 31855648 - 31855696
Alignment:
Q  414 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 462  Q
    |||||||||||||||||||| |||  |||||||||  ||||||||||||    
T  31855648 tttgagtaaactctcatttgaatctttgaaagtgtctctcgctatcaga 31855696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 414 - 567
Target Start/End: Complemental strand, 49919765 - 49919612
Alignment:
Q  414 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 513  Q
    ||||||||||||||||||||| ||| ||||||||| | ||||||||||  || ||||||||||||||||||| || |||||||||||||| |||| ||||    
T  49919765 tttgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttcc 49919666  T
Q  514 gttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 567  Q
     | |||||||| | |||| | |||||||||  |||||||||| || ||||||||    
T  49919665 atcagtcattcccatccagaacgttaactgatcgttaactgtactgatctggcc 49919612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 417 - 611
Target Start/End: Original strand, 26529508 - 26529701
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||| |||||| | ||| |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtagg 611  Q
    |||||    | |||||| |||||||| |  |||||| ||||| || || ||| || || | ||||||||| || |||| |||| |||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatttgtccgttacacataccacttcagctgttgta-tggctttccacgtagg 26529701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 416 - 541
Target Start/End: Complemental strand, 26531152 - 26531027
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||||| ||||||| | ||||||||||||||||||||||| ||| ||||||||| |||||  |||||||| |||||||||| |||||||| ||| |     
T  26531152 tgagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgc 26531053  T
Q  516 tagtcattcacgtccaaagcgttaac 541  Q
    ||||||| |||||||||| |||||||    
T  26531052 tagtcatacacgtccaaaacgttaac 26531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 417 - 610
Target Start/End: Original strand, 36573962 - 36574155
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||| | |||||||||||||||||||||||||   ||||||||| |||||  ||||||||||||||||||| |||||||| |||||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
    |||||    | |||||| |||||||| |  | |||| ||||| || || ||| || || ||||||||||| || | ||||||| ||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttgatgctaacggtgctgatgtgtccgttacacatgccacttcagctgttatattggctttccacgtag 36574155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 540
Target Start/End: Complemental strand, 36575598 - 36575475
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| |||||| |  |||||  |||||||| ||||||| || |||||||| |||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  517 agtcattcacgtccaaagcgttaa 540  Q
    |||||| || ||||||| ||||||    
T  36575498 agtcatacaagtccaaaacgttaa 36575475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 36574956 - 36575017
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| | | |||||||||||||    
T  36574956 gagtaaactttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaa 36575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 533
Target Start/End: Original strand, 35062564 - 35062680
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    ||||||||  |||||||| | ||| |||||  |||||| |||||   || |||||| |||||| |||| ||| ||||||||||||||||| | |||||||    
T  35062564 gagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgtt 35062663  T
Q  517 agtcattcacgtccaaa 533  Q
    |||||| ||||||||||    
T  35062664 agtcatccacgtccaaa 35062680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 35063683 - 35063596
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaat 504  Q
    |||||||| ||||||||| || ||||||||||  ||| |||||||  || || || |||||||||||||||| |||||||||||||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaat 35063596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 26530502 - 26530563
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| | | |||||||||||||    
T  26530502 gagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaa 26530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 499
Target Start/End: Original strand, 49917389 - 49917470
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccc 499  Q
    |||||||||||||||||| || |||||||| || |||||||| ||  || ||| |||||||||  || |||||||||||||||    
T  49917389 gagtaaactctcatttgggtctctgaaagtatagctcgctat-agtcacatccttggatcaatttaatgaactaaaaactccc 49917470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 610
Target Start/End: Original strand, 16727813 - 16728005
Alignment:
Q  418 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtta 517  Q
    ||||||| ||||||||| || |||||||||||||||||||||||  |||| |||| |||||  |||||||||||||||| || |||||||| ||||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  518 gtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 610  Q
    ||||    | |||||| | |||||| |  |||||| ||||| || || ||| || || ||||||||||| || | || |||| ||||||||||    
T  16727913 gtcaaatgcatccaaaacattaacttgatgttaacggtgctgatgtgtccgttacacatgccacttcagctgttatactggctttccacgtag 16728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 505
Target Start/End: Original strand, 38921454 - 38921543
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 505  Q
    ||||||||| ||||||||| |||||||||||||  ||| |||||||  || ||||| ||||||||||| |||| ||||||||||||||||    
T  38921454 tgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatg 38921543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 533
Target Start/End: Original strand, 35967351 - 35967464
Alignment:
Q  420 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagt 519  Q
    ||||| |||||||||||||||||||||  || ||| ||||||  || |||  | |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagt 35967450  T
Q  520 cattcacgtccaaa 533  Q
    ||  ||||||||||    
T  35967451 caaccacgtccaaa 35967464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 35968757 - 35968670
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaat 504  Q
    |||||||| || | ||||||||||||||||||   ||||||||||  || | | | |||||||||||||||| |||||||||||||||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaat 35968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 580
Target Start/End: Original strand, 5005708 - 5005871
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| |||||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||| | || || | |||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 5005807  T
Q  517 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 580  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| |||||| |||| | |||||||    
T  5005808 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctggacgctggtcttgcca 5005871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 567
Target Start/End: Complemental strand, 5014886 - 5014735
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||   |||||| || |||||  ||||| |  ||||||||| | || || | ||||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgt 5014787  T
Q  516 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 567  Q
    |||||||||   |||||| ||||||||| ||||||||  |||| ||||||||    
T  5014786 tagtcattccgatccaaaacgttaactgagcgttaacactgctgatctggcc 5014735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  418 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtta 517  Q
    ||||||| ||| ||||| |||||||||||| |||||||||||||  ||||||||| |||||| |||||||| |||||||| | |||||  | ||||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  518 gtcattcacgtccaaagcgttaa 540  Q
    |||| |  |||||||| ||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 521
Target Start/End: Original strand, 17863465 - 17863570
Alignment:
Q  416 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 515  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||  || ||| ||||||||| |||  ||| ||||||||| ||||||| | ||||||    
T  17863465 tgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgt 17863564  T
Q  516 tagtca 521  Q
     |||||    
T  17863565 cagtca 17863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 12887786 - 12887725
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 478  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||| |  ||||||||||||    
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagacatatccctggatcaa 12887725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 37241028 - 37241113
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccccca 502  Q
    |||||||  ||| ||||| | |||||||||||| |||||||||||  |||| | ||||||||||||||| || |||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactccccca 37241113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 521
Target Start/End: Complemental strand, 17864776 - 17864672
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| ||||||||| ||| |||||||| | |||||||||||  || |||| |||||||  |||||||| || ||||||| |||||||| ||  |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  517 agtca 521  Q
    |||||    
T  17864676 agtca 17864672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 516  Q
    |||||||| |||| |||| ||||||||| || |  ||||||||||  |||||||| ||||||| || ||||  |||||||||||||||   | |||||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  517 agtcattcacgtccaaagcgttaa 540  Q
    ||||| |  |||||||| ||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 32565695 - 32565606
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 506  Q
    |||||||| ||| ||| | ||||||||||||| |||||||||||||   |||||| |||||||  || |||  |||||||||||||||||    
T  32565695 gagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgt 32565606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Complemental strand, 12888305 - 12888252
Alignment:
Q  417 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccc 470  Q
    |||||||  ||||||||  ||||||||| ||||||||||||||||| |||||||    
T  12888305 gagtaaatcctcatttgagtccctgaaattgtacctcgctatcagacacgtccc 12888252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 12887022 - 12887062
Alignment:
Q  415 ttgagtaaactctcatttggatccctgaaagtgtacctcgc 455  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  12887022 ttgagtaaactctcatttgaaaccctgaaagtgtacttcgc 12887062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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