View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_11 (Length: 361)
Name: NF20010_low_11
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 34479338 - 34478995
Alignment:
| Q |
15 |
aataatattggatataatcatatacat--gtataataattaatgaattatttccagtttgggaccatagaagaagataccataaaatactaacaacacta |
112 |
Q |
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| T |
34479338 |
aataatattggatataatcatatacatatgtataataattaatgaattatttccagtttgggaccatagaagaagataccataaaatactaacaacacta |
34479239 |
T |
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| Q |
113 |
atgtcatgaactctataatcggttggattgtttgtcatatgggatatatataattgcacattattacataagaaagtgatgcaccatttgactttagcaa |
212 |
Q |
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| T |
34479238 |
atgtcatgaactctataatcggttggattgtttgtcatatgggatatatataattgcacattattacataagaaagtgatgcaccatttgactttagcaa |
34479139 |
T |
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| Q |
213 |
tcagttactctcacacaaagttgaccatataatgacaaccataatgctatcagaatcccttaatttaattacaataatgcacttcaaatttaaaaacttg |
312 |
Q |
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| T |
34479138 |
tcagtaactctcacacaaagttgaccatataatgacaaccataatgctatcagaatcccttaatttaattacaataatgcacttcaaatttaaaaacttg |
34479039 |
T |
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| Q |
313 |
tggtacttatgataaccaactaaatgagctccatttttcaatta |
356 |
Q |
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| T |
34479038 |
tggtacttatgataaccaactaaatgagctccatttttcaatta |
34478995 |
T |
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