View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_13 (Length: 294)
Name: NF20010_low_13
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 44899006 - 44899291
Alignment:
| Q |
17 |
actttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44899006 |
actttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatg |
44899105 |
T |
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| Q |
117 |
ggaaggagtaacagggattataatgattgttttaatgacaattgccttcacgttggctagtccttggttaaggaaaagaaaggttggagaaccc------ |
210 |
Q |
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| T |
44899106 |
ggaaggagtaacagggattataatggttgttttaatgacaattgccttcacgttggctagtccttggttaaggaaaagaaaggttggagaacccagaaag |
44899205 |
T |
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| Q |
211 |
------------agaaaggtcgaaaaacccaaaacacccaattgcctccaacccctcattaatataactggtttcaatgccctttg |
284 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44899206 |
gacaaagaaccgagaaaggacgaagaacccaaaacacccaattgcctccaacccctcattaatataactggtttcaatgccttttg |
44899291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 44885645 - 44885816
Alignment:
| Q |
40 |
aatagtgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataa |
139 |
Q |
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| T |
44885645 |
aatagtgaaaagtacaagctcatggaaccattttttggaaagcaagcaacaaattattggcattttgtgaaatcatgggaaggagtaacagggattataa |
44885744 |
T |
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| Q |
140 |
tgattgttttaatgacaattgccttcacgttggctagtccttggttaaggaaaagaaaggttggagaaccca |
211 |
Q |
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| T |
44885745 |
tggttgttttaatggcaatagccttcacgacggctagtccttggttaaggaaaagaaaggtcgaagaaccca |
44885816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 44915261 - 44915445
Alignment:
| Q |
17 |
actttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatg |
116 |
Q |
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|||||||| | ||| |||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44915261 |
actttcctcgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttggaaagcaaccaacaagttattggcattttgtgaaatcatg |
44915360 |
T |
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| Q |
117 |
ggaaggagtaacagggattataatgattgttttaatgacaattgccttcacgttggctagtccttggttaaggaaaagaaaggtt |
201 |
Q |
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| T |
44915361 |
ggaaggagtaacggggattgtaatggttgttttaatgacaatagccttcacactggctagtccttggttcaggaaaggaagggtt |
44915445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 44885811 - 44885867
Alignment:
| Q |
224 |
aacccaaaacacccaattgcctccaacccctcattaata---taactggtttcaatg |
277 |
Q |
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|||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
44885811 |
aacccaaaacacccaattgcctccaacccctcctcaatagtgtaactggtttcaatg |
44885867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 39982931 - 39983050
Alignment:
| Q |
45 |
tgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatgatt |
144 |
Q |
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|||||||||| |||| || || || ||||| ||| || || |||||| ||| ||||||||||| ||||| |||||||| |||||||| ||| ||||| || |
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| T |
39982931 |
tgaaaagtacaagctgattgagccttttttcggagagaaaccaacaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggtt |
39983030 |
T |
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| Q |
145 |
gttttaatgacaattgcctt |
164 |
Q |
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|| ||||| |||| ||||| |
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| T |
39983031 |
gtgctaatggcaatagcctt |
39983050 |
T |
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