View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20010_low_16 (Length: 278)

Name: NF20010_low_16
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20010_low_16
NF20010_low_16
[»] chr4 (4 HSPs)
chr4 (106-278)||(42225645-42225817)
chr4 (197-258)||(13508055-13508116)
chr4 (1-66)||(42225542-42225607)
chr4 (194-258)||(13507131-13507194)
[»] chr7 (2 HSPs)
chr7 (196-278)||(28557139-28557221)
chr7 (186-278)||(707736-707828)
[»] chr1 (3 HSPs)
chr1 (194-278)||(7384470-7384554)
chr1 (194-259)||(23573193-23573258)
chr1 (194-278)||(9419380-9419464)
[»] chr8 (1 HSPs)
chr8 (181-278)||(17707034-17707131)
[»] chr2 (1 HSPs)
chr2 (194-278)||(31559117-31559201)
[»] scaffold0140 (1 HSPs)
scaffold0140 (194-259)||(35887-35952)
[»] chr6 (1 HSPs)
chr6 (194-278)||(1134480-1134564)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 106 - 278
Target Start/End: Original strand, 42225645 - 42225817
Alignment:
Q  106 tcaggtctacttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcccctggaaaaacccaccacctcatggcaatgtcttctc 205  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  42225645 tcaggtcttcttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcctctggaaaaacccaccacctcatggcgatgtcttctc 42225744  T
Q  206 attccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  42225745 attccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctc 42225817  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 13508116 - 13508055
Alignment:
Q  197 tgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 258  Q
    ||||||||||||||||| ||||||||| ||||||| | |||| |||||||||||||||||||    
T  13508116 tgtcttctcattccattactaattcatattcaattaagttgcctatatgtggttgcaacaaa 13508055  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42225542 - 42225607
Alignment:
Q  1 agttgttgacaaacagagtcacacgtgatcaaaatcaaaaatgcaaattttcagacgaacgaattt 66  Q
    ||||| |||||||| ||||||||||||| ||||| |||||| |||||||| |||| | ||||||||    
T  42225542 agttgctgacaaacggagtcacacgtgaccaaaaccaaaaacgcaaatttgcagagggacgaattt 42225607  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 13507131 - 13507194
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 258  Q
    ||||||||||| |||||||| ||||||||||||||| || | ||| ||| |||||||||||||||    
T  13507131 caatgtcttcttattccattactaattcatcttcaa-ttgagtgcctatttgtggttgcaacaaa 13507194  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 28557221 - 28557139
Alignment:
Q  196 atgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    |||||||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  28557221 atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 28557139  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 707828 - 707736
Alignment:
Q  186 cctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    |||| |||||| |||||||| ||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  707828 cctcgtggcaaggtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 707736  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 7384554 - 7384470
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| ||||||||  ||||||||||| |||| ||||| ||||||    
T  7384554 caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctc 7384470  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 23573193 - 23573258
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 259  Q
    |||||||| ||||||||||  | ||||||||||||| | || ||| ||| ||||||||||||||||    
T  23573193 caatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaa 23573258  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 9419464 - 9419380
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    |||||||||||||||||||| || | ||||| |||||| | || | ||||  ||||| ||||||||| |||| ||||| ||||||    
T  9419464 caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctc 9419380  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 17707131 - 17707034
Alignment:
Q  181 caccacctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    |||| |||| ||||||||||||||| ||||||||||||| |||| |||||| |||| | |||||||||  ||||||||||||| | ||||| ||||||    
T  17707131 caccccctcgtggcaatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctc 17707034  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 31559201 - 31559117
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    |||||||||||||||||||| || | ||||| |||||| | |||| ||||||||||||||||||||| |||| ||||| ||||||    
T  31559201 caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctc 31559117  T

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Target: scaffold0140 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 35887 - 35952
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 259  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| ||| ||||||||||||||||    
T  35887 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaa 35952  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 1134480 - 1134564
Alignment:
Q  194 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 278  Q
    ||||||||||||||||||||  | | ||||| |||| | | |||| ||||||||||||||| ||||| |||| ||||| ||||||    
T  1134480 caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctc 1134564  T

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