View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_18 (Length: 265)
Name: NF20010_low_18
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 44965729 - 44965493
Alignment:
| Q |
14 |
ctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctgtttctctttcctcaaagagcc |
113 |
Q |
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| T |
44965729 |
ctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctgtttctctttcctcaaagagcc |
44965630 |
T |
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| Q |
114 |
aaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaatttcaccttatcaccatacctcttcgaaaccttaacataaagaggc |
213 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965629 |
aaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaatttcaccttatcaccatacctcttcgaaaccttaacataaagaggc |
44965530 |
T |
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| Q |
214 |
ttaatcagcttcaaatatttctgcaaaatctcctttg |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44965529 |
ttaatcagcttcaaatatttctgcaaaatctcctttg |
44965493 |
T |
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