View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_21 (Length: 242)
Name: NF20010_low_21
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42225528 - 42225301
Alignment:
| Q |
1 |
gaatttaacgttag-aactaaaaccaaaaaggttaacaatctacatgagctgttttagaaagaaggaaaatacaacgacgaaaacaaattaaaacacacg |
99 |
Q |
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|||||||||||||| |||||||| |||| ||||||||| |||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||| | | |
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| T |
42225528 |
gaatttaacgttaggaactaaaattaaaa-ggttaacaacctacgtgagttgttttagaaagaagaaaaatacaaggacgaaaacaaattaaaacaaatg |
42225430 |
T |
|
| Q |
100 |
aacttgcctaaacattttacttaagtcattattctttaatcgttccttatacagttatacttggtctctctggcttcaaataattattggctcggtccct |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42225429 |
aacttacctaaacattttacttaagtcattattctttaattgttccttatacagttatacttggtctctatggcttcaaataattattggctcggtccct |
42225330 |
T |
|
| Q |
200 |
gaggctgatagtgtagttgtgttgaaact |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
42225329 |
gaggctgatagtgtagttgtgttgaaact |
42225301 |
T |
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