View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_3 (Length: 510)
Name: NF20010_low_3
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Original strand, 4405595 - 4406084
Alignment:
| Q |
9 |
agcatagggtttgaaacatgttcagagttagtgccctgtgtcttctaaaatgttttaaagggcccatacttttccttgtcttgttctatatagtatgact |
108 |
Q |
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| T |
4405595 |
agcatagggtttgaaacatgttcagagttagtgccctgtgtcttctaaaatgttttaaagggcccatacttttccttgtcttgttctacatagcatgact |
4405694 |
T |
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| Q |
109 |
tcattatcatccaaccagttaacttgaccaaaacacccgaaaacgtttgctttaagagggaaaacaataatttccctcaatctttctgaaaaaggagtga |
208 |
Q |
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| T |
4405695 |
tcattatcatccaaccagttaacttgaccaaaacacccgaaaacgtttgcttt-agagggaaaacaataatttccctcaatctttctgaaaaaggagtga |
4405793 |
T |
|
| Q |
209 |
acctgttctgtaaccaaaattatgatgaaatgtttatacatacacatgtggtttca--tttannnnnnnngactaaatcatgtggtttcatttattgttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
4405794 |
acctgttctgtaaccaaaattatgatgaaatgtttatacatacacatgtggtttcattttttttttttttgactaaatcatgtggtttcatttattgttt |
4405893 |
T |
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| Q |
307 |
atctataaaatcttcttttccactgtatgaacagtggtatagacttcatttttaacgaaatacaatggtatagaaaattgtcacacaaaacaacaagtag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4405894 |
atctataaaatcttcttttccactgtatgaacagtggtatagatttcatttttaacgaaatacaatggtatagaaaattgtcacacaaaacaacaagtag |
4405993 |
T |
|
| Q |
407 |
aaagtaaatcattattcttaaagggcttccatcattcac-aaaaaatataatacaaattaatcattgatattttcataccttcaaattgtg |
496 |
Q |
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| T |
4405994 |
aaagtaaatcattattcttaaagggcttccatcattcacaaaaaaatataatacaaattaatcattgatattttcataccttcaaattgtg |
4406084 |
T |
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