View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20010_low_4 (Length: 489)
Name: NF20010_low_4
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 47935322 - 47935781
Alignment:
| Q |
13 |
aatattagtgcatgtagttttattgttcgtcaaaaacattctaatatccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaata |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47935322 |
aatattagtgcatttagttttattgttcgtcaaaaacattctagcatccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaata |
47935421 |
T |
|
| Q |
113 |
attatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47935422 |
attatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagtt |
47935521 |
T |
|
| Q |
213 |
acacatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactac |
312 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47935522 |
acatatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactac |
47935621 |
T |
|
| Q |
313 |
ccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaattacccaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47935622 |
ccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaattacccaa |
47935721 |
T |
|
| Q |
413 |
taattccgctggccaataacctaccatgatggtatccttcactctaagccaccagtttcc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47935722 |
taattccgctggccaataacctaccatgatggtatccttcactctaagccaccagtttcc |
47935781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 129 - 470
Target Start/End: Original strand, 47928004 - 47928345
Alignment:
| Q |
129 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacacatgctggatatt |
228 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||| ||| |||||| | |
|
|
| T |
47928004 |
cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatact |
47928103 |
T |
|
| Q |
229 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcctgt |
328 |
Q |
| |
|
| ||||||| ||||||||| |||||||| ||| | | |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
47928104 |
taagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcctgt |
47928203 |
T |
|
| Q |
329 |
gtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaattacccaataattccgctggccaa |
428 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
47928204 |
gtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaattacctaataactctgctggccaa |
47928303 |
T |
|
| Q |
429 |
taacctaccatgatggtatccttcactctaagccaccagttt |
470 |
Q |
| |
|
|||||||| |||| ||| ||||||| ||| |||||||||| |
|
|
| T |
47928304 |
taacctacagggatgttattcttcactttaaaccaccagttt |
47928345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 129 - 469
Target Start/End: Original strand, 47946580 - 47946920
Alignment:
| Q |
129 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacacatgctggatatt |
228 |
Q |
| |
|
||||||||| | || |||||||||| ||||||| || | || |||||||||||||||||||| |||||||| ||||| ||| ||||| || |||||| | |
|
|
| T |
47946580 |
cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact |
47946679 |
T |
|
| Q |
229 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcctgt |
328 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
47946680 |
tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgt |
47946779 |
T |
|
| Q |
329 |
gtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaattacccaataattccgctggccaa |
428 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||| || | ||||||||| |
|
|
| T |
47946780 |
gtgaggaggggttgttttcacattataactaaacacttgtccaccccattgaaccaatgttgcactatgttgtaagttacccactatcgctgctggccaa |
47946879 |
T |
|
| Q |
429 |
taacctaccatgatggtatccttcactctaagccaccagtt |
469 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
47946880 |
taacctacaatgattttatccttcattctaagccaccagtt |
47946920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 129 - 392
Target Start/End: Original strand, 47918242 - 47918502
Alignment:
| Q |
129 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacacatgctggatatt |
228 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||| ||||| ||| ||||| ||| ||| || | |
|
|
| T |
47918242 |
cctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgatgggtact |
47918341 |
T |
|
| Q |
229 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcctgt |
328 |
Q |
| |
|
| || |||| |||| ||| || ||||| ||| | ||||||||||| | ||||||| | | ||||||||||||||||||||| |||||||| || |
|
|
| T |
47918342 |
taagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttccagt |
47918441 |
T |
|
| Q |
329 |
gtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgca |
392 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
47918442 |
gtgaggag---tttttttgacctcataactaaacacttgtccaccccattgaaccaatgatgca |
47918502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 296 - 436
Target Start/End: Original strand, 47909243 - 47909383
Alignment:
| Q |
296 |
tgcttcttctccactacccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactg |
395 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| | ||||| ||| ||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
47909243 |
tgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaatacttgtccaccccattgaaccgtcgttgcactg |
47909342 |
T |
|
| Q |
396 |
tgtcttaaattacccaataattccgctggccaataacctac |
436 |
Q |
| |
|
||| | |||||||| ||||| || ||||||||||||||||| |
|
|
| T |
47909343 |
tgtttcaaattaccaaataactcagctggccaataacctac |
47909383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University