View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20010_low_7 (Length: 421)
Name: NF20010_low_7
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 47 - 408
Target Start/End: Complemental strand, 1328853 - 1328501
Alignment:
| Q |
47 |
ggtaagattttttaccagtgcttcttaagttttgatcttgtggttgttgtagatagtttttgttcctcataataagtagttcatacctatagaatcattt |
146 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328853 |
ggtaagattttttaccggtgcttcgtaagttttgatcttgtggttgttgtagatagattttgttcctcataataagtagttcatacctatagaatcattt |
1328754 |
T |
|
| Q |
147 |
aaacnnnnnnnnnnnnnnnnnnnnnatcattaatccattcttatattctcaaaaacatacataatcattaatccattcttatcttctcaaacatgcatac |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1328753 |
aaactttttttttttt---------atcattaatccattcttatattctcaaaaacatacataatcattaatccattcttatcttctcaaacatacatac |
1328663 |
T |
|
| Q |
247 |
aaacagcttacccttgaatcaatccaactgtcaaaataccataatgttccttacatataaactagtaaactacaaaatgtttataaaaatacataacaat |
346 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1328662 |
aaacagctcacccttgaatcaatccaactgttaaaataccataatgttccttacatataaactagtaaactacaaaatgtttataaaaatacataaccat |
1328563 |
T |
|
| Q |
347 |
agaaaacaaaattatagtatctatgtaaattgcaaaaaagaacattaaatatatctatatat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328562 |
agaaaacaaaattatagtatctatgtaaattgcaaaaaagaacattaaatatatctatatat |
1328501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University