View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20010_low_8 (Length: 416)
Name: NF20010_low_8
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_8 |
 | |
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| [»] scaffold0150 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 52145946 - 52145561
Alignment:
| Q |
15 |
actctttaattaattatttttgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtacgattaactttcaataccaatatg |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52145946 |
actctttaattaattatttgtgcaacaaccacacgcaactctttgggttaatatttgcttctaatgtagtacagtactattaactttcaataccaatatg |
52145847 |
T |
|
| Q |
115 |
gcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
52145846 |
gcttcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatctgtaatagact |
52145747 |
T |
|
| Q |
215 |
ttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
52145746 |
ttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtagtttaggaaatctgtatcagagtgttga |
52145647 |
T |
|
| Q |
315 |
aaacctcaaccaaaattgcatgcaaccatttcaaacgaaggatgtcttgccaaacccaagagctcaaagcttttcaactgaaatct |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52145646 |
aaacctcaaccaaaattgcatgcaaccatttcaaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatct |
52145561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 122 - 398
Target Start/End: Complemental strand, 52142321 - 52142045
Alignment:
| Q |
122 |
cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttctgtt |
221 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||| || ||||||||| |||||||||||||||| ||||||| |||| |||| |||||||||| || |
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| T |
52142321 |
cttcttcttccaccaaagtctccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtcgtagactttctttt |
52142222 |
T |
|
| Q |
222 |
caatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttgaaaacctc |
321 |
Q |
| |
|
||| |||||||| |||||||| ||||| || || ||||| |||||| | ||||| ||||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
52142221 |
caacttgctatgtttgccaatcggcactgttgtgaagctgctaagcgctaatggcatggttggtagcttagggaatctgtatgagagtgttgaaaacctc |
52142122 |
T |
|
| Q |
322 |
aaccaaaattgcatgcaaccatttcaaacgaaggatgtcttgccaaacccaagagctcaaagcttttcaactgaaat |
398 |
Q |
| |
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||||| |||| ||||| |||| |||||| |||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
52142121 |
aaccagaattacatgctaccagatcaaactaaggatgtactcttaaacccaagagctcaaagctcgtcaactgaaat |
52142045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 122 - 399
Target Start/End: Original strand, 17522266 - 17522543
Alignment:
| Q |
122 |
cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttctgtt |
221 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||| ||||||| |||| |||| | |||||||| || |
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| T |
17522266 |
cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt |
17522365 |
T |
|
| Q |
222 |
caatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttgaaaacctc |
321 |
Q |
| |
|
||| ||||||||||||||||| ||||| || || ||||| |||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
17522366 |
caacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaaacctc |
17522465 |
T |
|
| Q |
322 |
aaccaaaattgcatgcaaccatttcaaacgaaggatgtcttgccaaacccaagagctcaaagcttttcaactgaaatc |
399 |
Q |
| |
|
|| || |||||||||| |||| |||||||||||||| | |||||||||||||||||||| |||||||||||| |
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|
| T |
17522466 |
aatcagaattgcatgctaccagaacaaacgaaggatgttctcttaaacccaagagctcaaagctcgtcaactgaaatc |
17522543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 339
Target Start/End: Complemental strand, 17017121 - 17016900
Alignment:
| Q |
118 |
tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc |
217 |
Q |
| |
|
||||||||||| ||||||||| || | | || |||||||| || ||||||| ||| | |||||||||||| ||||| | ||| | || ||||||||| |
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| T |
17017121 |
tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttc |
17017022 |
T |
|
| Q |
218 |
tgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttgaaaa |
317 |
Q |
| |
|
| ||||| ||||||||||||| || || | ||| || ||||| || | || || | |||||||| || ||||| || || || |||||||| ||||| |
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| T |
17017021 |
ttttcaacatgctatgcttgcctataggtaacgtagtaaagcttctcaacaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaa |
17016922 |
T |
|
| Q |
318 |
cctcaaccaaaattgcatgcaa |
339 |
Q |
| |
|
||||||||| |||| ||||||| |
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| T |
17016921 |
cctcaaccacaattacatgcaa |
17016900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 339
Target Start/End: Complemental strand, 17547558 - 17547337
Alignment:
| Q |
118 |
tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc |
217 |
Q |
| |
|
||||||||||| ||||||||| || | | || |||||||| || ||||||| ||| | |||||||||||| ||||| | ||| | || ||||||||| |
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|
| T |
17547558 |
tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttc |
17547459 |
T |
|
| Q |
218 |
tgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttgaaaa |
317 |
Q |
| |
|
| ||||| ||||||||||||| || || | ||| || ||||| || | || || | |||||||| || ||||| || || || |||||||| ||||| |
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|
| T |
17547458 |
ttttcaacatgctatgcttgcctataggtaacgtagtaaagcttctcaacaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaa |
17547359 |
T |
|
| Q |
318 |
cctcaaccaaaattgcatgcaa |
339 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
17547358 |
cctcaaccacaattacatgcaa |
17547337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 17020090 - 17020302
Alignment:
| Q |
107 |
ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc |
203 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | | || |||||||| || || | ||||||||||||||| ||||| ||||| | |||| | |
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|
| T |
17020090 |
ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc |
17020189 |
T |
|
| Q |
204 |
tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtat |
303 |
Q |
| |
|
||| ||||| ||||| |||||| |||| | |||||| |||| || || ||||| || ||| || ||||| ||||||||||| | || ||||| ||| |
|
|
| T |
17020190 |
tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctat |
17020289 |
T |
|
| Q |
304 |
cagagtgttgaaa |
316 |
Q |
| |
|
| |||||||||| |
|
|
| T |
17020290 |
aacagtgttgaaa |
17020302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 17550527 - 17550739
Alignment:
| Q |
107 |
ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc |
203 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | | || |||||||| || || | ||||||||||||||| ||||| ||||| | |||| | |
|
|
| T |
17550527 |
ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc |
17550626 |
T |
|
| Q |
204 |
tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtat |
303 |
Q |
| |
|
||| ||||| ||||| |||||| |||| | |||||| |||| || || ||||| || ||| || ||||| ||||||||||| | || ||||| ||| |
|
|
| T |
17550627 |
tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctat |
17550726 |
T |
|
| Q |
304 |
cagagtgttgaaa |
316 |
Q |
| |
|
| |||||||||| |
|
|
| T |
17550727 |
aacagtgttgaaa |
17550739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 339
Target Start/End: Original strand, 17952 - 18173
Alignment:
| Q |
118 |
tcttcttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatctgtaatagactttc |
217 |
Q |
| |
|
||||||||||| ||||||||| || | | || |||||||| || ||||||||||| | |||||||||||| ||||| | ||| | || |||||||||| |
|
|
| T |
17952 |
tcttcttcttccaccaccaaactgaccctcaaacttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttc |
18051 |
T |
|
| Q |
218 |
tgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtatcagagtgttgaaaa |
317 |
Q |
| |
|
| ||||| ||||||||||||| || |||| ||| || ||||| || |||| || | |||||||| || ||||| || || || |||||||| ||||| |
|
|
| T |
18052 |
ttttcaacatgctatgcttgcctataggcaacgtagtaaagcttctcagcaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaa |
18151 |
T |
|
| Q |
318 |
cctcaaccaaaattgcatgcaa |
339 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
18152 |
cctcaaccacaattacatgcaa |
18173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 316
Target Start/End: Complemental strand, 9180 - 8968
Alignment:
| Q |
107 |
ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgccgaagcttaaaaatc |
203 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | | || ||||| || || || | ||||||||||||||| ||||| ||||| | |||| | |
|
|
| T |
9180 |
ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagc |
9081 |
T |
|
| Q |
204 |
tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggtatggttggtagtttaggaaatctgtat |
303 |
Q |
| |
|
||| ||||| ||||| |||||| |||| | |||||| |||| || || ||||| || ||| || ||||| ||||||||||| | || ||||| ||| |
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|
| T |
9080 |
tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctat |
8981 |
T |
|
| Q |
304 |
cagagtgttgaaa |
316 |
Q |
| |
|
| |||||||||| |
|
|
| T |
8980 |
aacagtgttgaaa |
8968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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