View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20010_low_9 (Length: 414)
Name: NF20010_low_9
Description: NF20010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20010_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 3 - 398
Target Start/End: Complemental strand, 16461839 - 16461464
Alignment:
| Q |
3 |
catgtccaagaaaatctcttggggaacctttgggatcttttttattatagtatcttgctcctatcaattttctgcagttgttttaagaaattttaatttt |
102 |
Q |
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| T |
16461839 |
catgtccattaaaatctcttggggaacctttgggatcttttttattatagtatcttgctcctatcaattttctgcagttgttttaagaaattttaatttt |
16461740 |
T |
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| Q |
103 |
aaatagaatataaaatcgatacgaattttgtcaaaatccaaaatatgataatgaaaagagttagcaatagatgtgagcttttggtgcaacatgtataatg |
202 |
Q |
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| T |
16461739 |
aaatagaacataaaatcgatgcgaattttgtcaaaatccataatatgataatgaaaagagttagcaatagatgtgagcttttggtgcaacatgtataatg |
16461640 |
T |
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| Q |
203 |
cattagtagcttaaagaaagttgcacttttccaattttcatattttattccatcccttagggcattcattagcatgtttcagtgaaaagtatgatgacct |
302 |
Q |
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| T |
16461639 |
cattagtagcttaaagaaagttgcact--------------------ttccatcccttaggacattcattagcatgtttcagtgaaaagtatgatgacct |
16461560 |
T |
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| Q |
303 |
gttgcaattagatttcttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtga |
398 |
Q |
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| T |
16461559 |
gttgcaattagatttcttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtga |
16461464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 299 - 398
Target Start/End: Complemental strand, 16491507 - 16491408
Alignment:
| Q |
299 |
acctgttgcaattagatttcttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtga |
398 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
16491507 |
acctgttgcaatttgatttcttgaaatcatgaccctccatgcaaattcctttccatcttgaaggaattttccctataccctcatctgtgaaacttggtga |
16491408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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