View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_high_12 (Length: 386)
Name: NF20011_high_12
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 23 - 368
Target Start/End: Original strand, 25452338 - 25452683
Alignment:
| Q |
23 |
attctccatgataattgaataaagaattgaaagaatccaaaactttattcatcttcaatttattgccaagaaaatgtatttataccatagttttaggggg |
122 |
Q |
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| T |
25452338 |
attctccatgataattgaataaagaattgaaagaatccaaaactttattcatcttcaacttattgccaagaaaatgtatttataccatagttttaggggg |
25452437 |
T |
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| Q |
123 |
gtagggtgaatgaaatgaaatgactggttcagaaaaatgttttgggcatggaacctaaattaactatagtagttaaaaaatttggtatttataccaaaaa |
222 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25452438 |
gtagagtgaatgaaatgaaatgactggttgagaaaaatgttttgggcatggaacctaaattaactatagtagttaaaatttttggtatttataccaaaaa |
25452537 |
T |
|
| Q |
223 |
ctgacacagtgggagtgttcactggcggtataactgacatattttactcagtataccaaataccatccattcacaccaagaagatgcttgtacagaaaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25452538 |
ctgacacagtgggagtgttcactggcggtataactgacatattttactcagtataccaaataccatccattcacaccaagaagatgcttgtacagaaaaa |
25452637 |
T |
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| Q |
323 |
tcagcacttttaggtacccagaagagaaaaggtattaggccaattt |
368 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25452638 |
tcagcacttttaggtacgcagaagagaaaaggtattaggccaattt |
25452683 |
T |
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