View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_high_13 (Length: 369)

Name: NF20011_high_13
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_high_13
NF20011_high_13
[»] chr1 (17 HSPs)
chr1 (13-346)||(13271888-13272221)
chr1 (145-356)||(13086399-13086610)
chr1 (145-346)||(13244213-13244411)
chr1 (224-341)||(12963679-12963796)
chr1 (198-343)||(13064958-13065103)
chr1 (193-334)||(13069916-13070057)
chr1 (198-344)||(30367853-30367999)
chr1 (145-332)||(13214132-13214313)
chr1 (193-339)||(13101306-13101452)
chr1 (200-325)||(19278912-19279037)
chr1 (198-334)||(13007511-13007647)
chr1 (233-339)||(13204765-13204871)
chr1 (145-334)||(19727464-19727647)
chr1 (200-338)||(13080609-13080747)
chr1 (237-337)||(13094707-13094807)
chr1 (237-337)||(13130136-13130236)
chr1 (237-357)||(13161809-13161929)
[»] chr6 (1 HSPs)
chr6 (233-339)||(31396455-31396562)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 13272221 - 13271888
Alignment:
Q  13 agaagaatagtgtagctcaagaaaatattcatcaattcttgttcaaaatgataatgcattcaaaatatgatgatgataaaagtagattaaaaaccaatga 112  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||    
T  13272221 agaagaacagtatagctcaaaaaaatattcatcaattcttgttcaaaatgataatgcattcgaaatatgatgaaaataaaagtagattaaaaaccagtga 13272122  T
Q  113 agatgttgcggaaattcaacctgttggcatgttaaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagac 212  Q
    ||||||||| |||||||| ||||||||  |||||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13272121 agatgttgctgaaattcatcctgttggtgtgttaaaaccactaatgaaggaaggcttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagac 13272022  T
Q  213 actgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaa 312  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||     
T  13272021 actgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaac 13271922  T
Q  313 taattcaagagataaaagataattgtctatcaca 346  Q
    | ||||||||||| |||||| |||||||| ||||    
T  13271921 ttattcaagagatcaaagatcattgtctaacaca 13271888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 145 - 356
Target Start/End: Complemental strand, 13086610 - 13086399
Alignment:
Q  145 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 244  Q
    |||| ||||| ||||| ||||| |||||||| || ||||||  ||||| ||| ||||||||||||||||||||||||| |||||| || ||||||| |||    
T  13086610 taaaggcactgatgaaggaaggcttgggaaatgaggaaatggttgaaattgataagtatattagagacactgcattcaatctcttagctgcaggaagtgg 13086511  T
Q  245 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataattgtctatca 344  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086510 aacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtctatca 13086411  T
Q  345 catgagaataat 356  Q
    |||||| |||||    
T  13086410 catgaggataat 13086399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 145 - 346
Target Start/End: Original strand, 13244213 - 13244411
Alignment:
Q  145 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 244  Q
    |||||| ||||||||| ||| ||||||||||||  |||||||  |   |||| |||||||| |||||||||||  | | |||||| |  |||||||||||    
T  13244213 taaaagaactaatgaaggaaagattgggaaagggggaaatgatcg---atgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatgg 13244309  T
Q  245 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataattgtctatca 344  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||||||||| ||    
T  13244310 aacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaaca 13244409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 12963679 - 12963796
Alignment:
Q  224 tctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagag 323  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||    
T  12963679 tctcttagctgcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagag 12963778  T
Q  324 ataaaagataattgtcta 341  Q
    || |||||||||| ||||    
T  12963779 attaaagataattttcta 12963796  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 343
Target Start/End: Original strand, 13064958 - 13065103
Alignment:
Q  198 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccca 297  Q
    |||||| |||||||||||||| ||| ||| |||  ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||  ||||||      
T  13064958 aagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtcatcctg 13065057  T
Q  298 tagtggaagctaaaataattcaagagataaaagataattgtctatc 343  Q
    | |||||||| || || ||||||||||| |||||||||||||||||    
T  13065058 ttgtggaagccaagattattcaagagatgaaagataattgtctatc 13065103  T

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Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 13069916 - 13070057
Alignment:
Q  193 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca 292  Q
    |||| |||||| ||||||||| |||| || |||||||   |||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||||||    
T  13069916 atgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactca 13070015  T
Q  293 tcccatagtggaagctaaaataattcaagagataaaagataa 334  Q
    ||| || |||||||| ||||| |||||||| |||||||||||    
T  13070016 tcctattgtggaagccaaaattattcaagaaataaaagataa 13070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 30367853 - 30367999
Alignment:
Q  198 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccca 297  Q
    |||||| ||||||||| |||| || |||| |||  |||||| ||||| ||| |||||||| |||| |||||||| || |||||||||||||||||||| |    
T  30367853 aagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatccta 30367952  T
Q  298 tagtggaagctaaaataattcaagagataaaagataattgtctatca 344  Q
    | |||||||| ||||| ||||||||||| |||||||||||| |||||    
T  30367953 ttgtggaagccaaaattattcaagagatcaaagataattgtgtatca 30367999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 332
Target Start/End: Complemental strand, 13214313 - 13214132
Alignment:
Q  145 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 244  Q
    |||||||||||||||| |||||||| |||||||  |||||| |||| ||      |||| ||||||||| |||  ||||||||||   ||||||||||||    
T  13214313 taaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaa------gtatcttagagacaatgcgatcactctctttttagcaggaaatgg 13214220  T
Q  245 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagat 332  Q
      ||||| |||||||||| | |||||| || |||||||||||||||||||  || |||||||||||||| |||||||| |||||||||    
T  13214219 cccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

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Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 339
Target Start/End: Complemental strand, 13101452 - 13101306
Alignment:
Q  193 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca 292  Q
    |||| |||||| ||||||||| || | ||||||||||   ||||||||||||  |||||||||||| ||| |||||||| || ||||||||||| |||||    
T  13101452 atgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactca 13101353  T
Q  293 tcccatagtggaagctaaaataattcaagagataaaagataattgtc 339  Q
    ||| || |||||||| |||||||||||||| || |||||||| ||||    
T  13101352 tcctattgtggaagccaaaataattcaagaaatcaaagataactgtc 13101306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 19278912 - 19279037
Alignment:
Q  200 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccata 299  Q
    ||||||||||||||||||  ||| ||||||||| ||||| ||||||||| ||||||| ||||| | ||||||||||||||| || ||||||||||| ||     
T  19278912 gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctatt 19279011  T
Q  300 gtggaagctaaaataattcaagagat 325  Q
    || ||||| ||||| |||||||||||    
T  19279012 gtcgaagcaaaaattattcaagagat 19279037  T

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Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 13007647 - 13007511
Alignment:
Q  198 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccca 297  Q
    |||||| ||||||||| ||   ||||||||||   |||||||||||| ||| ||||||||||||| |||||||| || |||||||||||||||||||| |    
T  13007647 aagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatccta 13007548  T
Q  298 tagtggaagctaaaataattcaagagataaaagataa 334  Q
    | |||||||| ||||| |||||||| || ||||||||    
T  13007547 ttgtggaagccaaaattattcaagaaatcaaagataa 13007511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 13204871 - 13204765
Alignment:
Q  233 agcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagat 332  Q
    |||||||| |||  ||| ||||||||||||||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| || ||||||    
T  13204871 agcaggaagtggtccagctagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagat 13204772  T
Q  333 aattgtc 339  Q
    || ||||    
T  13204771 aactgtc 13204765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 334
Target Start/End: Complemental strand, 19727647 - 19727464
Alignment:
Q  145 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 244  Q
    |||||||||||||||| |||||||  |||||||  ||||||||||| ||      |||| ||||||||| |  | ||||||||||   ||||||||||||    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaa------gtatcttagagacaatttactcactctctttttagcaggaaatgg 19727554  T
Q  245 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataa 334  Q
      |||||||| ||||||| |||||||| |||||||||||||| |||||||| || || ||||| ||||| |||||||| || ||||||||    
T  19727553 cccagttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataa 19727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 13080609 - 13080747
Alignment:
Q  200 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccata 299  Q
    |||||||||||| ||| || ||| ||||||||  ||||||||||||||| ||||| ||||||| | |||||| |||||||| |||||||| ||||| |      
T  13080609 gtatattagagatactacaatcaatctcttggttgcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagg 13080708  T
Q  300 gtggaagctaaaataattcaagagataaaagataattgt 338  Q
    || || | |||||| ||||||||||| ||||||||||||    
T  13080709 gtagatggtaaaattattcaagagatcaaagataattgt 13080747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 13094807 - 13094707
Alignment:
Q  237 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataatt 336  Q
    |||||||| ||| ||||||||| ||| |||||||| || |||||| |||||||| |||| || |||||||  ||||| ||||||||||| | ||||||||    
T  13094807 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataatt 13094708  T
Q  337 g 337  Q
    |    
T  13094707 g 13094707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 13130236 - 13130136
Alignment:
Q  237 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataatt 336  Q
    ||||||||  || ||||||||| ||| |||||||| || |||||| |||||||| |||| || |||||||  ||||| ||||||||||| ||||||||||    
T  13130236 ggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13130137  T
Q  337 g 337  Q
    |    
T  13130136 g 13130136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 13161929 - 13161809
Alignment:
Q  237 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcccatagtggaagctaaaataattcaagagataaaagataatt 336  Q
    ||||||||  || ||||||||| ||| |||||||| || |||||  |||||||| |||| || |||||||  ||||| ||||||||||| ||||||||||    
T  13161929 ggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13161830  T
Q  337 gtctatcacatgagaataatc 357  Q
    | ||| |||| ||| ||||||    
T  13161829 ggctaacacaagaggataatc 13161809  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 31396455 - 31396562
Alignment:
Q  233 agcaggaaatggaacagttagttcaggtctaagttggttcttttggcttg-tttcaactcatcccatagtggaagctaaaataattcaagagataaaaga 331  Q
    |||||||||||| ||| |||||||| ||||  ||||||| || ||||||| ||||||||||||| |  |||||||| ||||| |||||||||||  ||||    
T  31396455 agcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaaga 31396554  T
Q  332 taattgtc 339  Q
    ||| ||||    
T  31396555 taactgtc 31396562  T

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