View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_high_14 (Length: 361)
Name: NF20011_high_14
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 75 - 310
Target Start/End: Original strand, 1635643 - 1635879
Alignment:
| Q |
75 |
ctccattcccttatctttccctctaaactcgcaaactaagttttatttaccatggtttatctcgatcactcttgtttttccaacaatgaaattgannnnn |
174 |
Q |
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| T |
1635643 |
ctccattcccttatctttccctccaaactcgcaaactaagttttatttaccatggtttatctcgatcactcttgtttttccaacaatgaaattgattttt |
1635742 |
T |
|
| Q |
175 |
nnn-cttcagatttaatcttttttctagtcatccaaaagcgttataatggaaatcggaaagccaaagcttaatttttcaacaatgtatgttaattaacaa |
273 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1635743 |
ttttcttcagatttaatcttttttctgatcatccaaaagcgttataatggaaatcgggaagccaaagcttaatttttcaacaatgtatgttaattaacaa |
1635842 |
T |
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| Q |
274 |
gtttcatcaaactagtcaaaaaacaaattctatgaag |
310 |
Q |
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| T |
1635843 |
atttcatcaaactagtcaaaaaacaaattctatgaag |
1635879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 1635547 - 1635607
Alignment:
| Q |
16 |
taagattttgtattatgaagaaaaatgaactatgtgaagctccctcccgatgtatatttct |
76 |
Q |
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| T |
1635547 |
taagattttgtattatgaagaaaaatgaactacgtgaagccccctctcgatgtatatttct |
1635607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 6491189 - 6491161
Alignment:
| Q |
17 |
aagattttgtattatgaagaaaaatgaac |
45 |
Q |
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| T |
6491189 |
aagattttgtattatgaagaaaaatgaac |
6491161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 6491399 - 6491427
Alignment:
| Q |
17 |
aagattttgtattatgaagaaaaatgaac |
45 |
Q |
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| T |
6491399 |
aagattttgtattatgaagaaaaatgaac |
6491427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 53013611 - 53013583
Alignment:
| Q |
17 |
aagattttgtattatgaagaaaaatgaac |
45 |
Q |
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| T |
53013611 |
aagattttgtattatgaagaaaaatgaac |
53013583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 718591 - 718619
Alignment:
| Q |
17 |
aagattttgtattatgaagaaaaatgaac |
45 |
Q |
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| T |
718591 |
aagattttgtattatgaagaaaaatgaac |
718619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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