View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20011_high_16 (Length: 335)
Name: NF20011_high_16
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 8829959 - 8830264
Alignment:
| Q |
17 |
agtatgcggatccccttcccagatatgacaacaacatccttgttatatgtttggtccttcaataccaaatttgcagcctgctaccaattgaggtgtaacg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8829959 |
agtatgcggatccccttcccagatatgacaacaacatccttgttatatgtttggcccttcaataccaaatttgcagcctgctaccaattgaggtgtaacg |
8830058 |
T |
|
| Q |
117 |
atcggttcagtatgcgnnnnnnnnnnnnacgagnnnnnnnntcgcaacgaatgaaaagtgtttggtttggttcagttcttgataaatttggtcagaagac |
216 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
8830059 |
atcggttcagtttgcgttttttttt---acgagaaaaaaaatcgcaacgaatgaaaagtgtttggtttggtttagttcttgataaattttgtcagaagac |
8830155 |
T |
|
| Q |
217 |
ccgaatcaaacaaacttgatgataattacgggttagttcaggtgatcggttcaacttaaaattgtcaaaataaaaactgaacaaaattgcaattattaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8830156 |
ccgaatcaaacaaacttgatgataattacgggttagttcaggtgatcggttcaacttaaaattgttaaaataaaaactgaacaaaattgcaattattaaa |
8830255 |
T |
|
| Q |
317 |
cacagctct |
325 |
Q |
| |
|
||||||||| |
|
|
| T |
8830256 |
cacagctct |
8830264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University