View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20011_high_17 (Length: 328)
Name: NF20011_high_17
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 42087873 - 42088170
Alignment:
| Q |
14 |
atatagctaaaaaagaatgtatgtcaaggttatttgtatcacgttattggaacttgtaaaggaaggatcatagtgacttatggtactagaaaacgtgtgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42087873 |
atatagctaaaaaagaatgtatgtcaaggttatttgtatcacgttattggaacttgtaaaggaaggatcatagtgacttatggtactagaaaacgtgtgg |
42087972 |
T |
|
| Q |
114 |
tgcttactatctttttatttgctaggtagaaaaaacgtagaccgttacttttctcactctacgagtttctcatgcgtcctattctaattttaacattcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||| || || |
|
|
| T |
42087973 |
tgcttactatctttttatttgctaggtagaaagaaagtagaccgttacttttctcactctatgagtttttcgtgcgtcctattctgattttaaaatctaa |
42088072 |
T |
|
| Q |
214 |
aatatttcaaacgcgttttaagaattttttataggctgtctgtattgttcggattatataacctaaactgcataaaacacacgagaagctcatagagt |
311 |
Q |
| |
|
||||||||||||| |||| |||| |||||| | ||||||||| |||| ||||||||||||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
42088073 |
aatatttcaaacgtatttttagaagtttttagggaatgtctgtatcgttcagattatataacctgaactgcataagacacacgagaaactcatagagt |
42088170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University