View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_high_22 (Length: 292)
Name: NF20011_high_22
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 38548100 - 38547825
Alignment:
| Q |
1 |
tcatcaaagtttattaatatattccattagccaagctaaatcaatcatatcttaatttgggattcgaacccccgcccctgcatatattatccatttgtcc |
100 |
Q |
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| T |
38548100 |
tcatcaaagtttattaatatattccattagccaagctaaatcaatcatatcttaatttggggttcgaacccccgtccctgcatatattatgcatttgtcc |
38548001 |
T |
|
| Q |
101 |
atgacaactgagctaagtttaccgggacttagaatgatacatttaatcgttaagtaatagtcatgatctattagtactagttttattattgatttgatac |
200 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38548000 |
ctgacaactgagttaagtttatcgggacttagaatgatacatttaatcgttaagtaatagtcatgatctattagtagtagttttattattgatttgatac |
38547901 |
T |
|
| Q |
201 |
aaaatatcattgctnnnnnnntcctactaaaaaatcaaatactcacaatctttttgtgacttatattgaaacctaa |
276 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38547900 |
aaaatatcattgctaaaaaaatcctactaaaaaatcaaatactcacaatctttttgtgacttatatttaaacctaa |
38547825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 47440819 - 47440873
Alignment:
| Q |
63 |
ttcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaag |
117 |
Q |
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| T |
47440819 |
ttcgaaccccgacccctgcatatattatgcatttgtccctaccaactgagctaag |
47440873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 20101661 - 20101714
Alignment:
| Q |
63 |
ttcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaa |
116 |
Q |
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| T |
20101661 |
ttcgaaccccggcccctgcatataatatgcatttgtccataccaactgatctaa |
20101714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 6734743 - 6734813
Alignment:
| Q |
59 |
gggattcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaagtttaccgggact |
129 |
Q |
| |
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| T |
6734743 |
gggattcgaaacccggcccctacatatattatgcatttgtccctaccaactgagctaagttcacagggact |
6734813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 3821426 - 3821495
Alignment:
| Q |
59 |
gggattcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaagtttaccgggac |
128 |
Q |
| |
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| T |
3821426 |
gggattcgaaccccggcccctgcatataaaatgcatttgtccctaccaactgagcaaagcttacggggac |
3821495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 49308878 - 49308808
Alignment:
| Q |
63 |
ttcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaagtttaccgggacttagaa |
134 |
Q |
| |
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| T |
49308878 |
ttcgaaccccagaccttgcatatattatgcatt-gtccttgtcaactgagctaagcttacggggacttagaa |
49308808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 45665033 - 45665093
Alignment:
| Q |
56 |
tttgggattcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaa |
116 |
Q |
| |
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|||||| ||||||| || | ||||||||||||||| ||||||||| | |||||||||||| |
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| T |
45665033 |
tttggggttcgaacaccggtccctgcatatattatgcatttgtccctaccaactgagctaa |
45665093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 14583258 - 14583204
Alignment:
| Q |
63 |
ttcgaacccccgcccctgcatatattatccatttgtccatgacaactgagctaag |
117 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||| | |||||||| |||| |
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| T |
14583258 |
ttcgaaccccagcccctgcatatattatgcatttgtccctaccaactgagttaag |
14583204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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