View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20011_high_27 (Length: 261)
Name: NF20011_high_27
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 54980509 - 54980761
Alignment:
| Q |
1 |
aaatgaatcatgcataaatatacacataaaagataaagaaaaagataaggtaagtatatcacgattttctgaaaaatggaagagtgggttcatatatcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980509 |
aaatgaatcatgcataaatatacacataaaagataaagaaaaagataaggtaagtatatcacgattttctgaaaaatggaagagtgggttcatatatcta |
54980608 |
T |
|
| Q |
101 |
tatataagataaagataacttgatcagtctcaagaaaaatggaagtgttggtagagaaaaaaggttttagatcagtgcaagagctggcattgaattctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980609 |
tatataagataaagataacttgatcagtctcaagaaaaatggaagtgttggtagagaaaaaaggttttagatcagtgcaagagctggcattgaattctga |
54980708 |
T |
|
| Q |
201 |
aaatgtgactccaaatgagtatatctacgaggatggtgttgaacttgatgatg |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54980709 |
aaatgtgactccagatgagtatatctacgaggatggtgttgaactttatgatg |
54980761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 54980479 - 54980508
Alignment:
| Q |
24 |
acataaaagataaagaaaaagataaggtaa |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54980479 |
acataaaagataaagaaaaagataaggtaa |
54980508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University