View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_high_31 (Length: 247)

Name: NF20011_high_31
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_high_31
NF20011_high_31
[»] chr5 (4 HSPs)
chr5 (19-238)||(5472263-5472483)
chr5 (182-234)||(16172982-16173034)
chr5 (177-237)||(24255461-24255521)
chr5 (183-238)||(43442222-43442278)
[»] chr8 (7 HSPs)
chr8 (175-232)||(13525569-13525626)
chr8 (175-232)||(13615104-13615161)
chr8 (182-237)||(22200684-22200739)
chr8 (182-238)||(30482560-30482616)
chr8 (175-231)||(33585757-33585813)
chr8 (175-232)||(11714948-11715005)
chr8 (183-234)||(36205221-36205273)
[»] chr3 (6 HSPs)
chr3 (172-237)||(51532797-51532862)
chr3 (172-230)||(27811999-27812057)
chr3 (155-232)||(55371414-55371491)
chr3 (175-238)||(4252519-4252582)
chr3 (183-234)||(10682942-10682993)
chr3 (192-225)||(48991675-48991708)
[»] chr2 (3 HSPs)
chr2 (172-231)||(40591191-40591250)
chr2 (175-238)||(8192474-8192537)
chr2 (182-234)||(31681074-31681127)
[»] chr1 (3 HSPs)
chr1 (172-237)||(1138587-1138652)
chr1 (182-218)||(6471690-6471726)
chr1 (182-238)||(17447292-17447348)
[»] chr6 (2 HSPs)
chr6 (182-234)||(3869721-3869773)
chr6 (182-238)||(17149579-17149635)
[»] scaffold0140 (1 HSPs)
scaffold0140 (196-238)||(29506-29548)
[»] chr7 (2 HSPs)
chr7 (192-238)||(28647001-28647047)
chr7 (183-238)||(7721395-7721451)
[»] chr4 (6 HSPs)
chr4 (176-238)||(9646339-9646401)
chr4 (176-234)||(40252310-40252368)
chr4 (188-238)||(41085050-41085100)
chr4 (175-232)||(12710190-12710247)
chr4 (182-231)||(37317404-37317453)
chr4 (182-234)||(25414213-25414265)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 5472263 - 5472483
Alignment:
Q  19 gatggatcatggatggttgctagtactatactgtgatctcattaatttgagagacaaaatatcataaccaataatgcactactagaatatataattgtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5472263 gatggatcatggatggttgctagtactatactgtgatctcattaatttgagagacaaaatatcataaccaataatgcactactagaatatataattgtaa 5472362  T
Q  119 g-nnnnnnnntgctttttatttgataatgttgtcttttttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaag 217  Q
    |         |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||  ||||    
T  5472363 gaaaaaaaaatgctttttatttgataatgttgtcttttttaaccaatttggggctgacctattagttggtttgagatcttggagtgtacttttcctaaag 5472462  T
Q  218 tctcatgttcgattctctctg 238  Q
    | | |||||||||||||||||    
T  5472463 tttaatgttcgattctctctg 5472483  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 16173034 - 16172982
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 234  Q
    ||||| |||||| |||||||||| || ||||||| |||||| |||||||||||    
T  16173034 gttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattctc 16172982  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 24255461 - 24255521
Alignment:
Q  177 tagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctct 237  Q
    |||| ||||| ||||||| |||||||||| | |||||||| || ||| |||||||||||||    
T  24255461 tagtggttggcttgagatgttggagtgtattcctctcaaaatcacatattcgattctctct 24255521  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 43442222 - 43442278
Alignment:
Q  183 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctg 238  Q
    |||||||||||||| ||||||| || ||| |||| |||||| |||||||||||||||    
T  43442222 ttggtttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctg 43442278  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 13525569 - 13525626
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 232  Q
    |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||    
T  13525569 cctagtagttggtttgagattttagaatgtacttctctcaaggtctcatgttcgattc 13525626  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 13615104 - 13615161
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 232  Q
    |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||    
T  13615104 cctagtagttggtttgagattttagaatgtacttctctcaaggtctcatgttcgattc 13615161  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 22200739 - 22200684
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctct 237  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  22200739 gttggtttgggatcttggagtttacttctctcaaagtctcaggttcgattccctct 22200684  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 30482560 - 30482616
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    |||||||||||||||| || ||| |||||||||| |||||| || ||||||||||||    
T  30482560 gttggtttgagatcttcgaatgtgcttctctcaatgtctcaggtccgattctctctg 30482616  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 33585813 - 33585757
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgatt 231  Q
    |||||| |||||||||||||||| |||||| || |||||||||| ||| ||||||||    
T  33585813 cctagtggttggtttgagatcttagagtgtgctcctctcaaagtttcaggttcgatt 33585757  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 11715005 - 11714948
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 232  Q
    |||||| ||||||||||||||||||||| | ||||||||||  | ||| |||||||||    
T  11715005 cctagtggttggtttgagatcttggagtttgcttctctcaagatttcaggttcgattc 11714948  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 36205221 - 36205273
Alignment:
Q  183 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctc 234  Q
    |||||||||||||| ||||||| || ||| |||| ||||||||||||||||||    
T  36205221 ttggtttgagatctgggagtgtgctcctcctcaaggtctcatgttcgattctc 36205273  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 51532797 - 51532862
Alignment:
Q  172 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctct 237  Q
    ||||||| ||||||||||||||| ||||||| | ||||||  || |||||||||||||||||||||    
T  51532797 tgacctattagttggtttgagattttggagtttgcttctccaaaggtctcatgttcgattctctct 51532862  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 27812057 - 27811999
Alignment:
Q  172 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgat 230  Q
    ||||||||| |||| |||||||| ||||| ||| |||||||||| ||||||||||||||    
T  27812057 tgacctagtggttgatttgagattttggaatgtgcttctctcaaggtctcatgttcgat 27811999  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 55371491 - 55371414
Alignment:
Q  155 tttaaccaattcgaggctgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 232  Q
    ||||||| ||| |||| || |||||| ||||| ||| ||| ||||||| | |||||||||| ||||||||||||||||    
T  55371491 tttaacctatttgaggttggcctagtggttggcttgcgattttggagtatgcttctctcaaggtctcatgttcgattc 55371414  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 4252582 - 4252519
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    |||||| ||||| ||||||||||||||||| || ||||||| |||||| ||| ||||| |||||    
T  4252582 cctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgattccctctg 4252519  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 10682993 - 10682942
Alignment:
Q  183 ttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 234  Q
    |||| |||||| |||||||||| ||||||||||||||||| |||| ||||||    
T  10682993 ttggcttgagaccttggagtgtgcttctctcaaagtctcaggttcaattctc 10682942  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 48991675 - 48991708
Alignment:
Q  192 gatcttggagtgtacttctctcaaagtctcatgt 225  Q
    ||||||||||||| ||||||||||||||||||||    
T  48991675 gatcttggagtgtgcttctctcaaagtctcatgt 48991708  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 40591191 - 40591250
Alignment:
Q  172 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgatt 231  Q
    ||||||| ||||||| ||||||||||||||||| || |||||||||||||| ||| ||||    
T  40591191 tgacctaatagttggcttgagatcttggagtgtgctcctctcaaagtctcaggtttgatt 40591250  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 8192537 - 8192474
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    |||||| ||||| ||| ||||||||||||| || ||||||| |||||| ||||||||| |||||    
T  8192537 cctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctg 8192474  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 31681074 - 31681127
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctc 234  Q
    ||||| |||||| |||||||||| |||||| ||||||||||| |||||||||||    
T  31681074 gttggcttgagaccttggagtgtgcttctcctcaaagtctcaggttcgattctc 31681127  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 1138587 - 1138652
Alignment:
Q  172 tgacctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctct 237  Q
    ||||||||| ||||| ||||||||||||||||| || ||||||| |||| | |||||| |||||||    
T  1138587 tgacctagtggttggcttgagatcttggagtgtgctcctctcaaggtcttaggttcgaatctctct 1138652  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 6471690 - 6471726
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagt 218  Q
    ||||||||||||||||||||| | |||||||||||||    
T  6471690 gttggtttgagatcttggagtatgcttctctcaaagt 6471726  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 17447292 - 17447348
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    |||| |||||||||||||||||| ||||||| || |||||  ||| |||||||||||    
T  17447292 gttgatttgagatcttggagtgtgcttctctgaaggtctctggtttgattctctctg 17447348  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 3869721 - 3869773
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 234  Q
    ||||| |||||||||| |||||| ||||| |||| ||||||||||||||||||    
T  3869721 gttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcgattctc 3869773  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 17149635 - 17149579
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    ||||||||| ||||||||||||| || ||||||| |||||| ||||||||| |||||    
T  17149635 gttggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctg 17149579  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 29548 - 29506
Alignment:
Q  196 ttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  29548 ttggagtgtgtttctctcaaagtctcatgtttgattctctctg 29506  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 28647001 - 28647047
Alignment:
Q  192 gatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    ||||||||||||| |||||||||| |||||| ||||||||| |||||    
T  28647001 gatcttggagtgtgcttctctcaaggtctcaggttcgattccctctg 28647047  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 7721395 - 7721451
Alignment:
Q  183 ttggtttgagatcttggagtgtacttctc-tcaaagtctcatgttcgattctctctg 238  Q
    |||||||| || || |||||||||| ||| |||| ||||||||||||||||||||||    
T  7721395 ttggtttgggacctgggagtgtactcctcctcaaggtctcatgttcgattctctctg 7721451  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 9646401 - 9646339
Alignment:
Q  176 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    ||||| ||||||||| |||||| |||||| || || |||| |||||||||| |||||||||||    
T  9646401 ctagtggttggtttgggatctttgagtgtgctcctgtcaaggtctcatgtttgattctctctg 9646339  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 40252310 - 40252368
Alignment:
Q  176 ctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 234  Q
    ||||||||||  |||  |||||||||||| |||||||||| |||||| |||||||||||    
T  40252310 ctagtagttgacttggaatcttggagtgtgcttctctcaaggtctcaagttcgattctc 40252368  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 41085050 - 41085100
Alignment:
Q  188 ttgagatcttggagtgtacttctctcaaagtctcatgttcgattctctctg 238  Q
    ||||||||||||||||| || || |||| |||| |||||||||||||||||    
T  41085050 ttgagatcttggagtgtcctcctttcaaggtctaatgttcgattctctctg 41085100  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 12710190 - 12710247
Alignment:
Q  175 cctagtagttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattc 232  Q
    |||||| ||||||||| ||||||||||| | ||||||| || |||||| |||||||||    
T  12710190 cctagtggttggtttgggatcttggagtatgcttctcttaaggtctcaggttcgattc 12710247  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 37317453 - 37317404
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgatt 231  Q
    ||||||||||||| ||| ||| |||| |||||||| ||||||||||||||    
T  37317453 gttggtttgagattttgaagtatactcctctcaaaatctcatgttcgatt 37317404  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 25414265 - 25414213
Alignment:
Q  182 gttggtttgagatcttggagtgtacttctctcaaagtctcatgttcgattctc 234  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||| |||||||    
T  25414265 gttggcttgagaccttggagtgtgctcctctcaaagtctcaggtttgattctc 25414213  T

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