View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_high_8 (Length: 423)
Name: NF20011_high_8
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_high_8 |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 6278 - 5857
Alignment:
| Q |
1 |
aattcaatagaagaaaatgactgtccatattctttcttggactgatataataacagggggaatcattttctgctatcta--agtatagtgcaaagtgaat |
98 |
Q |
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| T |
6278 |
aattcaatagaagaaaatgactgtccatattctttcttggactgatataataacagggggaatcattttctgctatctataagtatagtgcaaagtgaat |
6179 |
T |
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| Q |
99 |
ccatagaaagcaatgatcgtgtaggtgcagtctgtgcataaaatacaaactgtgaccctagaaacacacattaaaactattgagggatggttttattgcc |
198 |
Q |
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| T |
6178 |
ccatagaaagcaatgatcgtgtaggtgcagtctgtgcataaaatacgaactgtgaccctagaaacacacattaaaactattgagggatggttttatcgcc |
6079 |
T |
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| Q |
199 |
tatgtgatcctactcggcatgggattagtctccaagttacacatggaaatactcaatctacaaagtcgggcctagagtgt--------------agcata |
284 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
6078 |
tatgtgatcctactcggcctgggattagtctccaagttacacatggaaatactcaatctacagagtcgggcctagagtgtagcacctagagtgtagcata |
5979 |
T |
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| Q |
285 |
tgactccaaaataccttaccctaatgaaagccggttaagcttaaaattaaaagtactacaaactaacaatgaggaactgaagaagagctaaaagctgact |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5978 |
tgactccaaaataccttaccctaatgaaagccggttaagcttaaaattaaaagtactacaaactaacaatgaggaactgaagaagagctaaaagctgact |
5879 |
T |
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| Q |
385 |
gttatcaggtaaccttgcaagt |
406 |
Q |
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|||||||||||||||||||||| |
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| T |
5878 |
gttatcaggtaaccttgcaagt |
5857 |
T |
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