View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_low_1 (Length: 745)

Name: NF20011_low_1
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_low_1
NF20011_low_1
[»] chr3 (6 HSPs)
chr3 (375-646)||(10041876-10042158)
chr3 (382-557)||(11370189-11370366)
chr3 (382-451)||(10112150-10112219)
chr3 (382-451)||(10245835-10245904)
chr3 (382-451)||(10001958-10002027)
chr3 (409-449)||(27275978-27276018)
[»] chr1 (5 HSPs)
chr1 (25-204)||(20002468-20002646)
chr1 (203-377)||(20002675-20002833)
chr1 (408-451)||(36208793-36208836)
chr1 (410-451)||(36521290-36521331)
chr1 (410-449)||(52502149-52502188)
[»] scaffold0004 (2 HSPs)
scaffold0004 (25-204)||(341475-341653)
scaffold0004 (245-377)||(341288-341410)
[»] chr2 (4 HSPs)
chr2 (408-556)||(27510952-27511102)
chr2 (408-570)||(24247399-24247563)
chr2 (410-451)||(24267670-24267711)
chr2 (669-729)||(16291590-16291650)
[»] scaffold0073 (2 HSPs)
scaffold0073 (679-728)||(27784-27833)
scaffold0073 (375-458)||(27467-27550)
[»] scaffold0107 (1 HSPs)
scaffold0107 (604-646)||(45106-45148)
[»] scaffold0017 (1 HSPs)
scaffold0017 (382-557)||(188094-188271)
[»] chr5 (7 HSPs)
chr5 (382-557)||(25541285-25541462)
chr5 (408-451)||(30350154-30350197)
chr5 (409-451)||(30345273-30345315)
chr5 (408-451)||(17870256-17870299)
chr5 (410-449)||(24628564-24628603)
chr5 (380-458)||(26257-26335)
chr5 (409-451)||(10026556-10026598)
[»] chr4 (2 HSPs)
chr4 (382-451)||(14146159-14146228)
chr4 (409-451)||(55557724-55557766)
[»] scaffold0356 (1 HSPs)
scaffold0356 (383-451)||(16566-16634)
[»] scaffold0134 (1 HSPs)
scaffold0134 (408-557)||(4160-4311)
[»] scaffold0225 (1 HSPs)
scaffold0225 (408-451)||(12894-12937)
[»] scaffold0002 (2 HSPs)
scaffold0002 (408-451)||(319999-320042)
scaffold0002 (408-451)||(318331-318374)
[»] scaffold0262 (1 HSPs)
scaffold0262 (409-451)||(20581-20623)
[»] chr7 (3 HSPs)
chr7 (409-451)||(42233568-42233610)
chr7 (408-451)||(22845361-22845404)
chr7 (373-458)||(45285299-45285384)
[»] chr8 (1 HSPs)
chr8 (410-451)||(21112344-21112385)
[»] chr6 (2 HSPs)
chr6 (382-451)||(15334846-15334915)
chr6 (408-451)||(30882883-30882926)
[»] scaffold0118 (2 HSPs)
scaffold0118 (411-451)||(24125-24165)
scaffold0118 (410-449)||(27321-27360)
[»] scaffold0024 (1 HSPs)
scaffold0024 (493-545)||(74316-74368)
[»] scaffold0196 (1 HSPs)
scaffold0196 (408-451)||(24315-24358)
[»] scaffold0029 (1 HSPs)
scaffold0029 (408-451)||(140864-140907)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 375 - 646
Target Start/End: Original strand, 10041876 - 10042158
Alignment:
Q  375 tttacccctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaacatgatttgggcttccatg 474  Q
    ||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10041876 tttacccatagatccaaaaactttttattctcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtcctacatgatttgggcttccatg 10041975  T
Q  475 tagcttcgcaaaacctcgctttaaaatcttatgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttggagcccaaccatgtctt 574  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |||||||||||||  ||||||||||||||| || |||| |||    
T  10041976 tagcttcgcaaaaccttgctttaaaatcttatgtttgaagagactttgtttttcaccttttaagtgccaccacttgatccttggagcctaatcatggctt 10042075  T
Q  575 cttatttctttccttctcaacccttagat------------atatatgttgggttgtcaaattctctccaagtaagactttaca 646  Q
    ||| ||||| ||||| | ||||||||  |            ||||||| ||||||||||||||||||||||||||| |||||||    
T  10042076 cttctttctctcctt-tgaacccttacttccataaccaataatatatgatgggttgtcaaattctctccaagtaaggctttaca 10042158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 557
Target Start/End: Original strand, 11370189 - 11370366
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagct 479  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||| ||||||||| |||||| |||| | ||  || ||||   |||| ||||||||    
T  11370189 ctaggtccaaaacctattaattcttctagtgtctcttttgctacttttataatctcatatgtcattttgttccacgtatcatttttacttctatgtagct 11370288  T
Q  480 tcgcaaaacctcgctttaaaatcttatgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttg 557  Q
    || || |||||  ||| |||||||| |||  ||||| |||||| |||| | ||||||| || |||| |||||||||||    
T  11370289 tcacagaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccagttgatccttg 11370366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 10112150 - 10112219
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| |||||||||||    
T  10112150 ctaggtccaaaacctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgt 10112219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 10245835 - 10245904
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| |||||||||||    
T  10245835 ctaggtccaaaacctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgt 10245904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 10001958 - 10002027
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| || || ||| |  |||| ||||||||| ||||||||||||||||| |||||||||||    
T  10001958 ctaggtccaaaacctattaattcttctagtttctcttttgctacttttctaatctcatatgtcatcttgt 10002027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 27275978 - 27276018
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatctt 449  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  27275978 agtgtctcttttgctacttttctaatctcatatgtcatctt 27276018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 4e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 20002468 - 20002646
Alignment:
Q  25 atattctgatactaa-ggactactacatgatttccaacaaaccttcactttctccggcctaactattcccccgtgagatggagggcattggaagtaacat 123  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20002468 atattctgatactaaaggactacaacatgatttccaacaaaccttcactttctccggcctaactattcccccgtgagatggagggcattggaagtaacgt 20002567  T
Q  124 actcctttgacccctgtgatataaccaaagggaaattctgagataaatgtaggcataattgctgtttttgaatgcaaaaca 204  Q
    |||||||| | |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20002568 actccttt-aaccctgtaacataacc-aagggaaattctgagataaatgtaggcataattgctgtttttgaatgcaaaaca 20002646  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 20002675 - 20002833
Alignment:
Q  203 catgatgggttggttgtaagttgattgatttgcatataagataaaaagatggtaattttacctacatgccatcatgtttgcccaagggttcatcttcatc 302  Q
    ||||||| ||||||  | ||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||||||          
T  20002675 catgatgagttggtcatgagttgattgatttgcata------aaaaagatggtaattttacttacatgccatcatgtttgcccaagggttcatc------ 20002762  T
Q  303 atattgaactccatccaacccagaaaccaagacccggtggttctgcctaaccaacaaattttacaacacctcttt 377  Q
    |||||||||||||    |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  20002763 atattgaactcca----acccagaaaccaggacccagtggttctgcctgaccaacaaattttacaacacctcttt 20002833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 36208793 - 36208836
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  36208793 tagtgtctcttttgctacttttctaatctcatatgtcatcttgt 36208836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 36521290 - 36521331
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  36521290 gtgtctcttttgctacttttctaatctcatatgtcatcttgt 36521331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 52502149 - 52502188
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatctt 449  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  52502149 gtgtctcttttgctacttttctaatctcatatgtcatctt 52502188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 341653 - 341475
Alignment:
Q  25 atattctgatactaa-ggactactacatgatttccaacaaaccttcactttctccggcctaactattcccccgtgagatggagggcattggaagtaacat 123  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  341653 atattttgatactaaaggactactacatgatttccaacaaaccttcactttctccggcctaactattcccccgtgagatggagggcattggaagtaacgt 341554  T
Q  124 actcctttgacccctgtgatataaccaaagggaaattctgagataaatgtaggcataattgctgtttttgaatgcaaaaca 204  Q
    |||||||| | |||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  341553 actccttt-aaccctgtaacataacc-aagggaaattctgagataaatgtaggcataattactgtttttcaatgcaaaaca 341475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 245 - 377
Target Start/End: Complemental strand, 341410 - 341288
Alignment:
Q  245 aaaaagatggtaattttacctacatgccatcatgtttgcccaagggttcatcttcatcatattgaactccatccaacccagaaaccaagacccggtggtt 344  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||      |||||||||||||    |||||||| ||| ||||| ||||||    
T  341410 aaaaatatggtaattttacttacatgccatcatgtttgcccaagggttcatc------atattgaactcca----acccagaagccaggacccagtggtt 341321  T
Q  345 ctgcctaaccaacaaattttacaacacctcttt 377  Q
    |||||| ||||||||||||||||||||||||||    
T  341320 ctgcctgaccaacaaattttacaacacctcttt 341288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 556
Target Start/End: Original strand, 27510952 - 27511102
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagcttcgcaaaacctcgctttaaaatctta 505  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| | ||  || ||||  ||||| |||||||||  || |||||  ||| ||||||||     
T  27510952 tagtgtctcttttgctacttttctaatctcatatgtcatcttgttccacgtatcattttcgcttctatgtagcttaacacaaccttccttcaaaatcttt 27511051  T
Q  506 tgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatcctt 556  Q
    |||| ||||| |||||| |||| | ||||||| || ||||  |||||||||    
T  27511052 tgttggaaaacactttggttttgatcctttaaatgtcaccacttgatcctt 27511102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 570
Target Start/End: Original strand, 24247399 - 24247563
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagcttcgcaaaacctcgctttaaaatctta 505  Q
    |||||||||||||| ||||||||||||||||| |||||||||||   ||  || ||||  ||||| |||||| ||| || |||||  ||| ||||||||     
T  24247399 tagtgtctcttttgctacttttctaatctcatatgtcatcttgtttcacgtatcatttttgcttctatgtagtttcacacaaccttccttcaaaatcttt 24247498  T
Q  506 tgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttggagcccaaccatg 570  Q
    |||  ||||| |||||| |||| | ||||||| || ||||  |||||||||| | ||||| ||||    
T  24247499 tgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtatcccaatcatg 24247563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 24267711 - 24267670
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  24267711 gtgtctcttttgctacttttctaatctcatatgtcatcttgt 24267670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 669 - 729
Target Start/End: Complemental strand, 16291650 - 16291590
Alignment:
Q  669 attttctaacaagaaagaaatctatatgagaacattgcacctcactcttgtatgtgataag 729  Q
    |||| |||| ||||||||||||||| ||||||||||  ||| |||||||||| ||||||||    
T  16291650 atttcctaataagaaagaaatctatttgagaacattagaccccactcttgtaagtgataag 16291590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 728
Target Start/End: Original strand, 27784 - 27833
Alignment:
Q  679 aagaaagaaatctatatgagaacattgcacctcactcttgtatgtgataa 728  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  27784 aagaaagaaatatatatgagaacattgcaccacactcttgtatgtgataa 27833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 458
Target Start/End: Original strand, 27467 - 27550
Alignment:
Q  375 tttacccctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaacat 458  Q
    ||||||||||| ||||||| ||||||||| || || ||  |||| || ||||||||||| ||||||||||||||||||| ||||    
T  27467 tttacccctagatccaaaacctctttattctcctaatgattcttctgctacttttctaacctcatgtgtcatcttgtcccacat 27550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 646
Target Start/End: Original strand, 45106 - 45148
Alignment:
Q  604 atatatgttgggttgtcaaattctctccaagtaagactttaca 646  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  45106 atatatgatgggttgtcaaattctctccaagtaagactttaca 45148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 557
Target Start/End: Original strand, 188094 - 188271
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagct 479  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| ||||||||||| | ||  || ||||  ||||| ||||||||    
T  188094 ctaggtccaaaacctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgttccacgtatcattttcgcttctatgtagct 188193  T
Q  480 tcgcaaaacctcgctttaaaatcttatgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttg 557  Q
    || || |||||  | | |||||||| |||  ||||| | |||| |||| | ||||||| || ||||  ||||||||||    
T  188194 tcacacaaccttccatcaaaatcttttgtaggaaaacattttggttttgatcctttaaatgtcaccacttgatccttg 188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 557
Target Start/End: Complemental strand, 25541462 - 25541285
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagct 479  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| ||||||||||| | ||  || ||||  ||||| ||||||||    
T  25541462 ctaggtccaaaatctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgttccacgtatcattttcgcttctatgtagct 25541363  T
Q  480 tcgcaaaacctcgctttaaaatcttatgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttg 557  Q
    || || |||||  ||| |||||||| |||  ||||| | |||| |||| | | ||||| || ||||  ||||||||||    
T  25541362 tcacacaaccttccttcaaaatcttttgtaggaaaacattttggttttgatcttttaaatgtcaccacttgatccttg 25541285  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 30350197 - 30350154
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  30350197 tagtgtctcttttgctacttttctaatctcatatgtcatcttgt 30350154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 451
Target Start/End: Complemental strand, 30345315 - 30345273
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  30345315 agtgtctcttttgctacttttctaatctcatatgtcatcttgt 30345273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 17870299 - 17870256
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| |||||||||||||| || |||||||||||    
T  17870299 tagtgtctcttttgctacttttctaatcttatatgtcatcttgt 17870256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 24628603 - 24628564
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatctt 449  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  24628603 gtgtctcttttgctacttttctaatctcatatgtcatctt 24628564  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 26335 - 26257
Alignment:
Q  380 ccctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaacat 458  Q
    |||||||||||||| ||||| ||| ||  |  |||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  26335 ccctaggtccaaaacctcttgattctcccaacgtcttttttgctactattttaatctcatgtgtcatcttgtcccacat 26257  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 10026556 - 10026598
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||| |||||||| ||||||||||||||||| |||||||||||    
T  10026556 agtgcctcttttgctacttttctaatctcatatgtcatcttgt 10026598  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 14146228 - 14146159
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| |||||||||||    
T  14146228 ctaggtccaaaatctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgt 14146159  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 451
Target Start/End: Complemental strand, 55557766 - 55557724
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  55557766 agtgtctcttttgctacttttctaatctcatatgtcatcttgt 55557724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 16634 - 16566
Alignment:
Q  383 taggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||| || || ||| |  |||||||||||||| ||||||||||||||||| |||||||||||    
T  16634 taggtccaaaacctattaattcttctagtgtctcttttgctacttttctaatctcatatgtcatcttgt 16566  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 557
Target Start/End: Complemental strand, 4311 - 4160
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaac--atgatttgggcttccatgtagcttcgcaaaacctcgctttaaaatctta 505  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| | ||  || ||||   |||| |||||||||| || |||||  ||| ||||||||     
T  4311 tagtgtctcttttgctacttttctaatctcatatgtcatcttgttccacatatcattttcacttctatgtagcttcacacaaccttccttcaaaatcttt 4212  T
Q  506 tgtttgaaaatactttgtttttcaccctttaagtgccaccggttgatccttg 557  Q
    ||   ||||| |||||| |||| | ||||||| || ||||  ||||||||||    
T  4211 tgcaagaaaacactttggttttgatcctttaaatgtcaccacttgatccttg 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 12937 - 12894
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  12937 tagtgtctcttttgctacttttctaatctcatatgtcatcttgt 12894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 320042 - 319999
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  320042 tagtgtctcttttgctacttttctaatctcatatgtcatcttgt 319999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 318374 - 318331
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||    
T  318374 tagtgtctcttttgctacttttctaatctcatatgtcattttgt 318331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 20581 - 20623
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  20581 agtgtctcttttgctacttttctaatctcatatgtcatcttgt 20623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 42233568 - 42233610
Alignment:
Q  409 agtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  42233568 agtgtctcttttgctacttttctaatctcatatgtcatcttgt 42233610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 22845361 - 22845404
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| |||||||||||||| || |||||||||||    
T  22845361 tagtgtctcttttgctacttttctaatcttatatgtcatcttgt 22845404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 45285384 - 45285299
Alignment:
Q  373 tctttacccctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgtccaacat 458  Q
    |||||||||||| |||||||| ||||| | | ||  | |||| |||||| ||||||| ||| |||||||| |||||||||| ||||    
T  45285384 tctttacccctatgtccaaaacctcttaactctcccaatgtcgcttttgctacttttttaacctcatgtgccatcttgtcccacat 45285299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 21112385 - 21112344
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  21112385 gtgtctcttttgctacttttctaatctcatatgtcatcttgt 21112344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 15334846 - 15334915
Alignment:
Q  382 ctaggtccaaaaactctttattttcttagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||||||| || ||| |   |||||| |||||| ||||||||||||||||| |||||||||||    
T  15334846 ctaggtccaaaaactattaattcttcaagtgtcacttttgctacttttctaatctcatatgtcatcttgt 15334915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 30882883 - 30882926
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| |||||||||||||| || |||||||||||    
T  30882883 tagtgtctcttttgctacttttctaatcttatatgtcatcttgt 30882926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 24165 - 24125
Alignment:
Q  411 tgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  24165 tgtctcttttgctacttttctaatctcatatgtcatcttgt 24125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 27360 - 27321
Alignment:
Q  410 gtgtctcttttgatacttttctaatctcatgtgtcatctt 449  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  27360 gtgtctcttttgctacttttctaatctcatatgtcatctt 27321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 545
Target Start/End: Complemental strand, 74368 - 74316
Alignment:
Q  493 ctttaaaatcttatgtttgaaaatactttgtttttcaccctttaagtgccacc 545  Q
    |||||| ||||| |||| |||||| |||||||||||||||||||| |||||||    
T  74368 ctttaagatcttgtgttggaaaattctttgtttttcaccctttaaatgccacc 74316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 24315 - 24358
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||    
T  24315 tagtgtcttttttgctacttttctaatctcatatgtcatcttgt 24358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 140907 - 140864
Alignment:
Q  408 tagtgtctcttttgatacttttctaatctcatgtgtcatcttgt 451  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||    
T  140907 tagtgtctcttttgctacttttctaatctcatatgtcattttgt 140864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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