View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_low_10 (Length: 414)

Name: NF20011_low_10
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_low_10
NF20011_low_10
[»] chr7 (7 HSPs)
chr7 (13-414)||(38014162-38014565)
chr7 (215-406)||(46664228-46664415)
chr7 (232-382)||(5560476-5560624)
chr7 (232-307)||(29361466-29361541)
chr7 (328-412)||(20501845-20501930)
chr7 (344-406)||(29361593-29361655)
chr7 (237-296)||(29139947-29140007)
[»] chr1 (5 HSPs)
chr1 (231-387)||(27829103-27829261)
chr1 (248-306)||(24564035-24564093)
chr1 (348-406)||(30036750-30036808)
chr1 (324-365)||(7082809-7082852)
chr1 (240-276)||(24553885-24553921)
[»] chr4 (4 HSPs)
chr4 (231-414)||(45571472-45571656)
chr4 (221-414)||(28721916-28722110)
chr4 (231-344)||(23247180-23247293)
chr4 (231-414)||(43055975-43056165)
[»] chr8 (3 HSPs)
chr8 (220-414)||(24347566-24347760)
chr8 (231-414)||(8495395-8495576)
chr8 (232-356)||(34162578-34162701)
[»] chr5 (5 HSPs)
chr5 (242-413)||(8472863-8473031)
chr5 (231-399)||(8482017-8482187)
chr5 (231-406)||(19456632-19456807)
chr5 (238-308)||(32251244-32251314)
chr5 (264-331)||(681638-681705)
[»] chr2 (6 HSPs)
chr2 (171-344)||(29083611-29083779)
chr2 (232-411)||(38431882-38432064)
chr2 (266-414)||(35812693-35812843)
chr2 (233-355)||(9397640-9397764)
chr2 (234-360)||(32324348-32324472)
chr2 (231-296)||(9397368-9397433)
[»] chr6 (1 HSPs)
chr6 (231-365)||(19314032-19314167)
[»] chr3 (1 HSPs)
chr3 (234-282)||(11341394-11341442)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 38014162 - 38014565
Alignment:
Q  13 gcagagatacccggttcacacccaaaacaactacatttttaggaagttataagctgtttcccattgagtgtgatccatattgctgctagtgagtagacgc 112  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38014162 gcagagatatccggttcacacccaaaacaactgcatttttaggaagttataagctgtttcccattgagtgtgatccatattgctgatagtgagtagacgc 38014261  T
Q  113 tcgagtgtagtaggtgttatctggacagtagaactagggtctttgttaggaattggggtatagaatagaggataattagtgtaattaagagttacttaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014262 tcgagtgtagtaggtgttatctggacagtagaactagggtctttgttaggaattggggtatagaatagaggataattagtgtaattaagagttacttaat 38014361  T
Q  213 agaagttagttaattacaaagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38014362 agaagttagttaattacaaagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttagaaagtctttaagtagtcctcaattggc 38014461  T
Q  313 agatggaaaagatagctttgaataattaaa--ttgtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagctta 410  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  38014462 agatggaaaagatagctttgaataattaaattttgtgactagataattatctagcatgacaggagagtgctcttttgaggtagccttgtgtgcaaggtta 38014561  T
Q  411 tcat 414  Q
    ||||    
T  38014562 tcat 38014565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 215 - 406
Target Start/End: Original strand, 46664228 - 46664415
Alignment:
Q  215 aagttagttaattacaaagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcag 314  Q
    |||||||||| |||  |||||||||||||||||| |   ||||||  | || |||||||||| |||||| ||||||    || ||  |||||||||| ||    
T  46664228 aagttagttagttagtaagttgataagtttgttaagcaattgttatgattttttattttggtcattcttagaaagta---aaataaccctcaattggtag 46664324  T
Q  315 atggaaaagatagctttgaataattaaattgtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaag 406  Q
    |||| || ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  46664325 atgggaaggatagctttgaataattaagttgtgaccagagaattatctagtgtgaaaggagagtgctcttttg-ggtagccttgtgtgcaag 46664415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 5560624 - 5560476
Alignment:
Q  232 agttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagcttt 331  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| |||||||||   || ||    || ||||||    
T  5560624 agttgataagtttgttaggtggttgttagaagttgttattttggttattcttataaagtctttaaatagccctcaattgtttgaggg----gaaagcttt 5560529  T
Q  332 gaataattaaa--ttgtgactagagaattatctagtatgacaggagagtgctc 382  Q
    |||||||||||  ||||||||||||||||||||||| ||| | ||||||||||    
T  5560528 gaataattaaattttgtgactagagaattatctagtgtgaaaagagagtgctc 5560476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 29361466 - 29361541
Alignment:
Q  232 agttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaa 307  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||| ||||||    
T  29361466 agttgataaatttgttaggtggttgttaagagttgttattttggttattcttaggaagtctttaaatagccctcaa 29361541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 20501845 - 20501930
Alignment:
Q  328 ctttgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatc 412  Q
    |||||||||||||| ||  ||| ||||||| |||||| || ||| ||||||||||||||||| | |||||||||||| ||| |||||    
T  20501845 ctttgaataattaatttttgtggctagagagttatctggtgtgaaaggagagtgctcttttg-gatagccttgtgtgtaaggttatc 20501930  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 29361593 - 29361655
Alignment:
Q  344 tgtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaag 406  Q
    ||||| ||||||||||||| || ||| ||||||| |||| |||| ||||||||| ||||||||    
T  29361593 tgtgattagagaattatcttgtgtgaaaggagagggctcctttggggtagccttctgtgcaag 29361655  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 29140007 - 29139947
Alignment:
Q  237 ataagtttgttaggtggttgtt-aaaagttgttattttggttattcttggaaagtctttaa 296  Q
    |||||||||||||||||||||| || |||||||| |||| ||||||||  ||||| |||||    
T  29140007 ataagtttgttaggtggttgttgaagagttgttactttgattattcttataaagtatttaa 29139947  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 231 - 387
Target Start/End: Complemental strand, 27829261 - 27829103
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||||||||| ||| |||||||||| ||| || |||||| ||||    
T  27829261 aagttgataagtttgttaggtggttattaagagatgttattttggttatccttggaaagtctttaaatagccctcaattggtagaggggaaagatggctt 27829162  T
Q  331 tgaataattaaattgt--gactagagaattatctagtatgacaggagagtgctcttttg 387  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||||| ||||    
T  27829161 tgaataattaaattattggactagagaattatctagtgtgaaaggagagtgctcctttg 27829103  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 24564093 - 24564035
Alignment:
Q  248 aggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctca 306  Q
    |||||||| |||||||||||||||||||||||||||  || |||||||| ||| |||||    
T  24564093 aggtggtttttaaaagttgttattttggttattcttataatgtctttaaatagccctca 24564035  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 30036808 - 30036750
Alignment:
Q  348 actagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaag 406  Q
    |||||||||| ||||||||||| | |||||||||| |||| |||||||||| |||||||    
T  30036808 actagagaatgatctagtatgaaaagagagtgctcctttggggtagccttgagtgcaag 30036750  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 7082809 - 7082852
Alignment:
Q  324 atagctttgaataattaaatt--gtgactagagaattatctagt 365  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  7082809 atagctttgaataattaaattttgtgactagagaattatctagt 7082852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 24553921 - 24553885
Alignment:
Q  240 agtttgttaggtggttgttaaaagttgttattttggt 276  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24553921 agtttgttaggtggttgttaagagttgttattttggt 24553885  T

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Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 45571656 - 45571472
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||| |||| | | | ||||||||||||    
T  45571656 aagttgataagtttgttaggtggttcttaagagttgttattttggttattcttgggaagtctttaaatagtcctcagttggta-aagtaaaagatagctt 45571558  T
Q  331 tgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    ||||||||||||||  ||||| ||||| |  |||| | ||| |||||||||||| ||||||||||||||  ||||||| |||||||    
T  45571557 tgaataattaaatttcgtgaccagagattgctctaatgtgaaaggagagtgctcctttgaggtagccttaagtgcaaggttatcat 45571472  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 221 - 414
Target Start/End: Complemental strand, 28722110 - 28721916
Alignment:
Q  221 gttaattacaaagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaa 320  Q
    |||| |||| |||||||||||| ||||||||| || |||| |||||||||||||||||||||| |||||||||||| |||||||| ||||  ||| || |    
T  28722110 gttagttactaagttgataagtatgttaggtgatttttaagagttgttattttggttattcttagaaagtctttaaatagtcctcgattgataga-ggga 28722012  T
Q  321 aagatagctttgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    ||||||||||||||||||||||||  ||| || ||||||  |||||| ||| |||||||||||  |||| |||||||||| ||||||  |||||||    
T  28722011 aagatagctttgaataattaaatttagtgcctcgagaatgctctagtgtgaaaggagagtgcttctttggggtagccttgagtgcaacgttatcat 28721916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 23247180 - 23247293
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    |||| |||||| ||||||||||||||||||  || ||||||||||||||||||  ||||||||||| |||||||||||| | ||| ||||||||||||||    
T  23247180 aagtcgataagcttgttaggtggttgttaagggtagttattttggttattcttaaaaagtctttaaatagtcctcaattcgtagagggaaaagatagctt 23247279  T
Q  331 tgaataattaaatt 344  Q
    ||||||||||||||    
T  23247280 tgaataattaaatt 23247293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 43056165 - 43055975
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttg------gaaagtctttaagtagtcctcaattggcagatggaaaaga 324  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  ||||| ||       |||||||||||| ||| | |||||||| ||| || |  ||    
T  43056165 aagttgataagtttgttaggtagttgttaagagttgttattttcattattattattctcagaaagtctttaaatagccttcaattggtagaggggag-ga 43056067  T
Q  325 tagctttgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    ||||||||||||||||||||  ||||||||| |||  |||||| ||| |||||||||||| |||| ||||||||||  |||||| |||||||    
T  43056066 tagctttgaataattaaatttagtgactagacaatgctctagtgtgaaaggagagtgctcctttggggtagccttgaatgcaaggttatcat 43055975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 414
Target Start/End: Original strand, 24347566 - 24347760
Alignment:
Q  220 agttaattacaaagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatgga 319  Q
    |||||||||  ||||||||||||||||| ||||||||| ||  |||| |||||||||||| |||  ||||||||||| || |||| |||||| ||  ||     
T  24347566 agttaattagtaagttgataagtttgttgggtggttgtcaacggttgctattttggttatccttataaagtctttaaatattcctgaattggtag--ggg 24347663  T
Q  320 aaagatagctttgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||  ||| |||||||||||||||||| |||||||    
T  24347664 aaagatagctttgaataattaagttctgtgactagagaattatctagtgtgaaaggagagtgctccattggggtagccttgtgtgcaaggttatcat 24347760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 8495576 - 8495395
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    |||||||||| ||||||||  |||  ||| |||||||||||||||||||||| |   ||||||||| ||  |||| | ||| ||| || || ||||||||    
T  8495576 aagttgataactttgttagtcggtgtttacaagttgttattttggttattctcg---agtctttaaatatccctcgaatggtagaggggaa-gatagctt 8495481  T
Q  331 tgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    ||||||||||||||  || ||||| |||||||||||  ||| |||||||||||| |||| |||||||||||||| ||| |||||||    
T  8495480 tgaataattaaatttcgtcactagggaattatctagcgtgaaaggagagtgctcctttggggtagccttgtgtggaaggttatcat 8495395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 356
Target Start/End: Complemental strand, 34162701 - 34162578
Alignment:
Q  232 agttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagcttt 331  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||| || |||  | |||   | ||| || ||||||| ||||    
T  34162701 agttaataagtttgttatgtggttgttaagagttgttattttggttatgcttagaaagtcttcaaatagctcccaa-gagtagaggggaaagatatcttt 34162603  T
Q  332 gaataattaaattgtgactagagaa 356  Q
    |||||||||||||||||||||||||    
T  34162602 gaataattaaattgtgactagagaa 34162578  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 413
Target Start/End: Original strand, 8472863 - 8473031
Alignment:
Q  242 tttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctttgaataattaa 341  Q
    ||||||||||||||||||| |||||||   |||||||||||| |||||||||||| ||  |||||||||  ||  || ||||||||||||||| ||||||    
T  8472863 tttgttaggtggttgttaagagttgtt---ttggttattcttagaaagtctttaaatacccctcaattgatagcggggaaagatagctttgaaaaattaa 8472959  T
Q  342 attgtgactagagaattatctagtatgacaggagagtgct-cttttgaggtagccttgtgtgcaagcttatca 413  Q
    ||||||||||| |||||||||||| ||| | ||||||||| |||||| ||||||||  |||||||| ||||||    
T  8472960 attgtgactag-gaattatctagtgtgaaacgagagtgctccttttggggtagcctcctgtgcaaggttatca 8473031  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 399
Target Start/End: Original strand, 8482017 - 8482187
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    |||||||| | ||||||||||||||||||| | |||||||||||| ||||| | |||||||||||| ||  |||||||||| ||| || ||||||||||     
T  8482017 aagttgattaatttgttaggtggttgttaagatttgttattttggatattcatagaaagtctttaaatacccctcaattggtagaagggaaagatagctc 8482116  T
Q  331 tgaataattaaa--ttgtgactagagaattatctagtatgacaggagagtgct-cttttgaggtagccttgt 399  Q
    ||||  |||| |  |||||||||| |||||||||||| ||| ||||||||||| |||||| |||||||||||    
T  8482117 tgaaagattatattttgtgactag-gaattatctagtgtgaaaggagagtgctccttttggggtagccttgt 8482187  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 406
Target Start/End: Original strand, 19456632 - 19456807
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    ||||||||| |||||||||||| ||| ||  | ||||||||||||| |||||| |||||| |||||  ||  ||||||||| ||| || |||||||||||    
T  19456632 aagttgatacgtttgttaggtgattgctaggaattgttattttggtcattcttagaaagtttttaa--agctctcaattggtagaggggaaagatagctt 19456729  T
Q  331 tgaataattaaatt--gtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaag 406  Q
    ||||| ||||||||  ||||||| |||||  |||||| ||| ||||| |||||| |||  |||||||||| |||||||    
T  19456730 tgaattattaaatttagtgactaaagaatgttctagtgtgaaaggagcgtgctcctttagggtagccttgagtgcaag 19456807  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 32251314 - 32251244
Alignment:
Q  238 taagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaat 308  Q
    ||||||| |||||||  |||||| ||||||||||||||||||| || |||||||||||| ||| |||||||    
T  32251314 taagttttttaggtgactgttaagagttgttattttggttattgttagaaagtctttaaatagccctcaat 32251244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 681705 - 681638
Alignment:
Q  264 ttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagcttt 331  Q
    |||||||||||||| ||||| | |||||||||| ||| ||||||| |||||| || ||||||||||||    
T  681705 ttgttattttggtttttcttaggaagtctttaaatagccctcaatcggcagaggggaaagatagcttt 681638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 344
Target Start/End: Original strand, 29083611 - 29083779
Alignment:
Q  171 tatagaatagaggataattagtgtaattaagagttacttaatagaagttagttaattacaaagttgataagtttgttaggtggttgttaaaagttgttat 270  Q
    ||||||||| | |||| |||| ||| |||||| ||| |||||||||| |||||| |    |||||||||||||||||||||||||||||| | |||||||    
T  29083611 tatagaatatatgatacttagagtagttaagaattagttaatagaagctagttagt----aagttgataagtttgttaggtggttgttaagaattgttat 29083706  T
Q  271 tttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctttgaataattaaatt 344  Q
    | | |||||||||   |||| ||||| |||||||||||||| ||| |||||  |||||||||||||||||||||    
T  29083707 tattgttattctttagaagtgtttaaatagtcctcaattggtaga-ggaaataatagctttgaataattaaatt 29083779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 411
Target Start/End: Original strand, 38431882 - 38432064
Alignment:
Q  232 agttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatag--ct 329  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |  ||| ||||||  || |||  | |||| |||   |    
T  38431882 agttgataagtttgttaggtggttgttaagagttgttagtttggttattcttagaaagtcttcacatagccctcaa-gggtagaaaggaaagttagtttt 38431980  T
Q  330 ttgaataattaa--attgtgactagagaattatctagtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttat 411  Q
    ||||||||||||  || |||||||||||||  |||||| ||| |||||| ||||| |||| |||||||||||||||||| ||||    
T  38431981 ttgaataattaagtatagtgactagagaatgctctagtgtgaaaggagactgctcctttggggtagccttgtgtgcaaggttat 38432064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 414
Target Start/End: Complemental strand, 35812843 - 35812693
Alignment:
Q  266 gttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctttgaataattaaat--tgtgactagagaattatcta 363  Q
    ||||||||| |||||||| ||||||||||||  || |||||||||| ||| |  |  ||||||||||| |||| ||||  |||||||||||||||| |||    
T  35812843 gttattttgattattcttagaaagtctttaaacagccctcaattggtagaggagagggatagctttgactaataaaatcttgtgactagagaattaacta 35812744  T
Q  364 gtatgacaggagagtgctcttttgaggtagccttgtgtgcaagcttatcat 414  Q
    |  ||| | |||||||||| ||||  ||||||||||||||||| |||||||    
T  35812743 gagtgaaaagagagtgctcctttggagtagccttgtgtgcaaggttatcat 35812693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 9397640 - 9397764
Alignment:
Q  233 gttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatag-cttt 331  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||||| | |||| ||||| ||| ||||||  || ||| || ||||||||  |||    
T  9397640 gttgataagtttgttagttggttgttaagacttgttattttggttattcttagcaagtttttaaatagccctcaa-gggtagaggggaaagatagttttt 9397738  T
Q  332 gaataattaaatt--gtgactagaga 355  Q
    |||||||||||||  |||||||||||    
T  9397739 gaataattaaatttagtgactagaga 9397764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 360
Target Start/End: Complemental strand, 32324472 - 32324348
Alignment:
Q  234 ttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctttga 333  Q
    |||||||| |||||||||||||||||| ||| | ||||||||||| || |   |||||||||| ||| | |||||||  ||| || |||||||||||| |    
T  32324472 ttgataagcttgttaggtggttgttaagagtcgctattttggttaatcat-ataagtctttaaatagccatcaattgttagaggggaaagatagcttt-a 32324375  T
Q  334 ataattaaattgtgactagagaattat 360  Q
    ||| |||||||||||||||||||||||    
T  32324374 atacttaaattgtgactagagaattat 32324348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 9397368 - 9397433
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaa 296  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||||| | ||||||||||||    
T  9397368 aagttgataagtttgttaggtggttgttaagagctgttattttagttattcctagaaagtctttaa 9397433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 19314032 - 19314167
Alignment:
Q  231 aagttgataagtttgttaggtggttgttaaaagttgttattttggttattcttggaaagtctttaagtagtcctcaattggcagatggaaaagatagctt 330  Q
    ||||||||||| ||||| |||| || |||| |||||| |||||| ||||| || |||||| ||||| ||| |||||||||| ||| || || || |||||    
T  19314032 aagttgataagattgtttggtgatttttaagagttgtcattttg-ttattattagaaagtatttaaatagccctcaattggtagaggggaaggagagctt 19314130  T
Q  331 tgaataattaaa--ttgtgactagagaattatctagt 365  Q
    ||||||||||||  |||||| || |||||||||||||    
T  19314131 tgaataattaaattttgtgagtaaagaattatctagt 19314167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 11341394 - 11341442
Alignment:
Q  234 ttgataagtttgttaggtggttgttaaaagttgttattttggttattct 282  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  11341394 ttgataagtttgttacgtggttgttaagagttgctattttggttattct 11341442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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