View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_11 (Length: 405)
Name: NF20011_low_11
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 31436852 - 31436599
Alignment:
| Q |
4 |
tagagcagaaagagtattatgaccaagctagccaccgctctgcaagcttgaaaggcagaagtgatgagtaattccaaccatatagtctaatacgcaacaa |
103 |
Q |
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| T |
31436852 |
tagagcagaaagagtattatgaccaagctagccaccgctctgcaagcttgaaaggcaaaagtgatgagtaattccaaccatatagtctaatacgcaacaa |
31436753 |
T |
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| Q |
104 |
taagaaatgttttcaaggatcttgttaattaattgttgaaaaatctgtctttgactatcaatattaaattttgaattcaatcttcacagttcactaatta |
203 |
Q |
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| T |
31436752 |
taagaaatgttttcaaggatcttcttaattaattggtgcaaaatctatctttgactatcaatgttaaattttgaattcaatcttcacggttcactaatta |
31436653 |
T |
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| Q |
204 |
gattggaatatttggaggtgttcacaccgtaatgcatgcaagagtattgttaaa |
257 |
Q |
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| T |
31436652 |
gattggaatatttggaggtgttcacaccgtaatgcatgcaagaggattgttaaa |
31436599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 18567287 - 18567360
Alignment:
| Q |
315 |
ttagaccccaaactttgaaatagatatcacatgagataataaagtgacccttacagaatgtgttaaaaatatag |
388 |
Q |
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| T |
18567287 |
ttagaccccaaactttgaaatagatatcacatgagataaaaaagtgacccttacagaatgtgttaaaaatatag |
18567360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 31435662 - 31435589
Alignment:
| Q |
315 |
ttagaccccaaactttgaaatagatatcacatgagataataaagtgacccttacagaatgtgttaaaaatatag |
388 |
Q |
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| T |
31435662 |
ttagaccccaaactttgaaatagatatcacatgagataaaaaagtgacccttacagaatgtgttaaaaatatag |
31435589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 31436418 - 31436349
Alignment:
| Q |
249 |
attgttaaaaccactttccttctaatattgtctttaagacatacttttttattgagttaaatcaatttag |
318 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31436418 |
attgttaaaaccactttcctactaacattgtctttaagacatacttttttattgagttaaatcaatttag |
31436349 |
T |
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