View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_15 (Length: 354)
Name: NF20011_low_15
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 1426972 - 1426633
Alignment:
| Q |
11 |
agaatatctttcattcatcattggtagtgaagctaacttatttcactgatttggtttccttttattgactttcatgttttgaacctgacttactaattaa |
110 |
Q |
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| T |
1426972 |
agaatatctttcattcatcattggtagtgaagctaacttatttcactgattttgtttccttttattgactttcatgttttgaacttgacttactaattaa |
1426873 |
T |
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| Q |
111 |
caaagcataggattatccctttgttggtgtagacacatgaaagccttttgaggaagactgattaagctctcttggtgcttgcagctcaccgtcttttcca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1426872 |
caaagcataggattatccctttgttggtgtagacacatgaaagccttttgaggaagactgattaagctctcttggtgcttgcagctcacggtcttttcca |
1426773 |
T |
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| Q |
211 |
gaagtttatacattataattaatgcaaaaattatgcatgccctacaaataaacaatgatgatcccgtaaacagaaagcttgtattattattgtcctcggg |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1426772 |
gaagtttatacatta----taatgcaaaaattatgcatgccctacaaataaacaatgatgatcccgtaaacagaaagcttgtattattattgtcctcggg |
1426677 |
T |
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| Q |
311 |
agtgagacaatgacccaatcagtgtcgttttctctatagaaaaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1426676 |
agtgagacaatgacccaatcagtgtcgttttctctataaaaaaa |
1426633 |
T |
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