View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_19 (Length: 326)
Name: NF20011_low_19
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 42852615 - 42852911
Alignment:
| Q |
12 |
agcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt |
111 |
Q |
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| T |
42852615 |
agcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcacacttatccgagataggatgtaagttactatttgtttgttt |
42852714 |
T |
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| Q |
112 |
aacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaaatttattactcagattgtgattat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
42852715 |
aacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaatttttttactcagattgtgattat |
42852814 |
T |
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| Q |
212 |
atgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaact |
308 |
Q |
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| T |
42852815 |
atgtagtgtttatagttggtatttttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaact |
42852911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 42854041 - 42854103
Alignment:
| Q |
52 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaac |
114 |
Q |
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| T |
42854041 |
gaatttcttagagcacgctcatttattcaagagaggatgtaagttaccatttgtttgtttaac |
42854103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 42856378 - 42856447
Alignment:
| Q |
239 |
cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaact |
308 |
Q |
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| T |
42856378 |
cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaact |
42856447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 42860445 - 42860514
Alignment:
| Q |
239 |
cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaact |
308 |
Q |
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| T |
42860445 |
cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaact |
42860514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 42860281 - 42860383
Alignment:
| Q |
18 |
gatgccatctttaggcggatcagcaattaatacgga------atttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt |
111 |
Q |
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|||||||||||||||||||||| | ||||| | ||| |||||||||||||| | || |||| | ||| |||||||||||| |||||||||||||| |
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| T |
42860281 |
gatgccatctttaggcggatcaacgattaacatggaccaagaatttcttagagcacactcatttattcaagagaggatgtaagttgctatttgtttgttt |
42860380 |
T |
|
| Q |
112 |
aac |
114 |
Q |
| |
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||| |
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| T |
42860381 |
aac |
42860383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 42848006 - 42848050
Alignment:
| Q |
118 |
tcaataggtgtaatatttggagattgatattttcttgaaactaac |
162 |
Q |
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| T |
42848006 |
tcaataggtgtaatacttgaaaattcatattttcttgaaactaac |
42848050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 21765105 - 21765157
Alignment:
| Q |
52 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttg |
104 |
Q |
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||||||||||| ||||||||| || | |||||| ||||||||||||||||||| |
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| T |
21765105 |
gaatttcttagggcacgcgcagttgtacgagatgggatgtaagttactatttg |
21765157 |
T |
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