View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20011_low_2 (Length: 674)
Name: NF20011_low_2
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 15 - 663
Target Start/End: Complemental strand, 19577990 - 19577342
Alignment:
| Q |
15 |
agaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19577990 |
agaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttc |
19577891 |
T |
|
| Q |
115 |
gaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19577890 |
gaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttg |
19577791 |
T |
|
| Q |
215 |
ccaggttccggtggatcggaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgttgag |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19577790 |
ccaggttccggtggatcgaaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggagttgcattgtagactttgatcccaatttcttgttgag |
19577691 |
T |
|
| Q |
315 |
tttgttccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19577690 |
tttgttccatatttgattatttgtgaagagcgtgtgatgtgatacaatattggtgattgtgaatcaatgaaatggatttgaatgttggttatatagtgca |
19577591 |
T |
|
| Q |
415 |
aagtacatccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgctgaacgttgaagttagatgcaat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19577590 |
aagtacatccgtatcagtttaaattttttgagcagttggttaaccaattgttattttaacttgtaacttaaatatgttgaacgttgaagttagatgcaat |
19577491 |
T |
|
| Q |
515 |
attttaaaaaacgatccggccagtttgctgggaaccctagtctggtttgattcagtcatgtcaagtgaacccaagggcgtatctgaactctcaatatcgg |
614 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19577490 |
attttaaaaaacgatccggccagtttaccgggaaccctagtctggtttgattcggtcatgtcaagtgaacccaagggcgtatctggactctcaatatcgg |
19577391 |
T |
|
| Q |
615 |
tgaggcataattttttgtcaaataattaaataaaacgtacacaggttct |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19577390 |
tgaggcataattttttgtcaaataattaaataaaacgtacacatgttct |
19577342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 2787604 - 2787921
Alignment:
| Q |
15 |
agaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaacatgagtgcattgaccatttcggtagattgaaggaaggaccatttc |
114 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||| || || ||||| ||||| || || | ||||| ||||||||||||||||| |
|
|
| T |
2787604 |
agaaacaagagagtgcacatataattaaaaggaaatggatcatgatggtgtgtacgtgagtacattggccgttcctatagatcgaaggaaggaccatttc |
2787703 |
T |
|
| Q |
115 |
gaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgagagggttttttggacaccttttgccattatggcgcgacgtttcttg |
214 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||| || |||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
2787704 |
gaatgtgaggagtgttcctgatggaaggaagttaccaagtaaggaagtttttgaaagggttttttgcacgcctttcgccattatggcacgacgcttcttg |
2787803 |
T |
|
| Q |
215 |
ccaggttccggtggatcggaaggctggtgtgtgacgccgcctatggcctcttgtggtggaggtgttgcattgtagactttgatcccaatttcttgttgag |
314 |
Q |
| |
|
||| ||||||||||||| |||||||| || || ||| | || ||| | ||||||||||| ||||||| |||||||| |||||| |||||||||||||| | |
|
|
| T |
2787804 |
ccatgttccggtggatcagaaggctgctgcgttacggcccccatgacttcttgtggtggcggtgttgtattgtagattttgattccaatttcttgttgtg |
2787903 |
T |
|
| Q |
315 |
tttgttccatatttgatt |
332 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2787904 |
tttgttccatatttgatt |
2787921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 657
Target Start/End: Original strand, 7138208 - 7138280
Alignment:
| Q |
589 |
gggcgtatctgaactctcaatatcggtgaggcataatttttt----gtcaaataattaaataaaacgtacaca |
657 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7138208 |
gggcggatctgaactcaaaatattggtgaggcacaattttttcgcggtcaaataattaaataaaacgtacaca |
7138280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 595 - 653
Target Start/End: Original strand, 5090615 - 5090673
Alignment:
| Q |
595 |
atctgaactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacgta |
653 |
Q |
| |
|
||||| |||| |||||| ||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
5090615 |
atctggactcacaatattggtgaggcacaattttatgtcaaataatcaaataaaacgta |
5090673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 655
Target Start/End: Original strand, 30710605 - 30710653
Alignment:
| Q |
607 |
aatatcggtgaggcataattttttgtcaaataattaaataaaacgtaca |
655 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30710605 |
aatatcggtgaggcataatttcttgtcaaataattaaataaaacgtaca |
30710653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 8064304 - 8064369
Alignment:
| Q |
586 |
caagggcgtatctgaactctcaatatcggtgaggcataa-ttttttgtcaaataattaaataaaac |
650 |
Q |
| |
|
|||||||| ||||| |||| ||||||| ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8064304 |
caagggcggatctggactcaaaatatcgatgaggcacaaattttttgtcaaataattaaataaaac |
8064369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 650
Target Start/End: Original strand, 17304305 - 17304349
Alignment:
| Q |
607 |
aatatcggtgaggcataat-tttttgtcaaataattaaataaaac |
650 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
17304305 |
aatatcggtgaggcacaatgtttttgtcaaataattaaataaaac |
17304349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University