View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_20 (Length: 322)
Name: NF20011_low_20
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 6770935 - 6770613
Alignment:
| Q |
17 |
agaaatacagtacaggttcataaaccactaataaattcaggtttactnnnnnnntacacactattataatggtatgacatggataagtaatgattcatat |
116 |
Q |
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| T |
6770935 |
agaaatacagtacaggttcacaaaccactaataaattcaggtttactaaaaaaatacacactattgtaatggtatgacatggataagtaatgattcatat |
6770836 |
T |
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| Q |
117 |
tggatgt----------------------gacatagcatttccaataaactcagaaatatattatcgaaagaagaacgattttggcgaaatctataatgt |
194 |
Q |
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| T |
6770835 |
tggatgtatgtgtaaaattaatttacacagacatagcatttccaataaactcagaaatatattatcgaaagaagaacgattttggcgaaatctataatgt |
6770736 |
T |
|
| Q |
195 |
acatgttgtacttgaaatgagtgtgtgtaaacatatttgaattgagtttgagtaagcatatttgaattgagtttgtgtaatgtacttatgtgaactcaat |
294 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6770735 |
acatgttgtacttgaactgagtgtgtgtaaacatatttgaattgagtttgagtaagcatacttgaattgagtttgtgtaatgtacttatgtgaactcaat |
6770636 |
T |
|
| Q |
295 |
caaccacggagccaggaatttta |
317 |
Q |
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|| || ||||||||||||||||| |
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| T |
6770635 |
cagccgcggagccaggaatttta |
6770613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 283
Target Start/End: Complemental strand, 3107055 - 3106896
Alignment:
| Q |
124 |
gacatagcatttccaataaactcagaaatatattatcgaaagaagaacgattttggcgaaatctataatgtacatgttgtacttgaaatgagtgtgtgta |
223 |
Q |
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| T |
3107055 |
gacatagcatatccgttaaactcataaatatattatagaaagaaaaacgattttgacaaaatctataatgtacatgttgtacttgaactcgatttgccta |
3106956 |
T |
|
| Q |
224 |
aacatatttgaattgagtttgagtaagcatatttgaattgagtttgtgtaatgtacttat |
283 |
Q |
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| T |
3106955 |
aacatacttgaattaaatttgtgtaagcatacttgaattgagtttgtgtaatgtacttat |
3106896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 2807784 - 2807891
Alignment:
| Q |
182 |
aaatctataatgtacatgttgtacttgaaatgagtgtgtgtaaacatatttgaattgagtttgagtaagcatatttgaattgagtttgtgtaatgtactt |
281 |
Q |
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||||||||||||||||||||||||||||| ||||| | ||||||| | || ||||| ||||| |||||| || ||||||| ||||| ||| |||||||| |
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| T |
2807784 |
aaatctataatgtacatgttgtacttgaactgagtttaagtaaacaaactt-aattgggtttgtgtaagcgtacttgaatttagtttatgttatgtactt |
2807882 |
T |
|
| Q |
282 |
atgtgaact |
290 |
Q |
| |
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|| |||||| |
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| T |
2807883 |
atttgaact |
2807891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 2807917 - 2807985
Alignment:
| Q |
188 |
ataatgtacatgttgtacttgaaatgagt--gtgtgtaaacatatttgaattgagtttgagtaagcata |
254 |
Q |
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|||||||||| |||||||||||| | ||| ||||||||||||| ||||| |||||||| ||||||||| |
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| T |
2807917 |
ataatgtacaagttgtacttgaattaagtttgtgtgtaaacatacttgaaatgagtttgtgtaagcata |
2807985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 35411639 - 35411595
Alignment:
| Q |
199 |
gttgtacttgaaatgagtgtgtgtaaacatatttgaattgagttt |
243 |
Q |
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|||| ||||||| ||||||||||| |||||| ||||||||||||| |
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| T |
35411639 |
gttggacttgaattgagtgtgtgttaacatagttgaattgagttt |
35411595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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