View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_25 (Length: 272)
Name: NF20011_low_25
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 6117814 - 6118054
Alignment:
| Q |
17 |
tcaccgttcatcaaa-caatgtacatgataaaaaattatgtagtaacttccttccaaaaaattgtgttgcaactcaaatgtttatcttgtgttgatttcc |
115 |
Q |
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| T |
6117814 |
tcaccgttcatcaaaacaatgtacatgataaaaaattatgtagtaacttccttccaaaaaattgtgttgcaactcaaatgtttatcttgtgttgatttcc |
6117913 |
T |
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| Q |
116 |
ttgttttataccgtgtcctaaatcaaatacttaattttcatacttttctctttttaacaagccaaaataaattttatctaccatataaaaggttcccccc |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || | |
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| T |
6117914 |
ttgttctataccgtgtcctaaatcaaatacttaattttcatacttttctctttttaacaggccaaaataaaatttatctaccatataaaaggttctcctc |
6118013 |
T |
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| Q |
216 |
atcataagaagtgtataaaaagaacttagagtacaaatagt |
256 |
Q |
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| T |
6118014 |
atcataagaagtgtataaaaagaacttagagtacaaatagt |
6118054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 6122811 - 6123027
Alignment:
| Q |
17 |
tcaccgttcatcaaacaatgtacatgataaaaaattatgtagtaacttccttccaaaa----aattgtgttgcaactcaaatgtttatcttgtgttgatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6122811 |
tcaccgttcatcaaacaatgtacatgataaaaaattatgtagtaacttccttccaaaacaaaaattgtgttgcaactcaaatgtttatcttgtgttgatt |
6122910 |
T |
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| Q |
113 |
tccttgttttataccgtgtcctaaatcaaatacttaattttcatacttttctctttttaacaagccaaaataaattttatctaccatataaaaggttccc |
212 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
6122911 |
tccttattctataccgtgtcctaaatcaaatacttaattttcatacttttctctttttaacaagccaaaataaaatttatttaccatataaaaggttctt |
6123010 |
T |
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| Q |
213 |
cccatcataagaagtgt |
229 |
Q |
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||||||||||||||||| |
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| T |
6123011 |
cccatcataagaagtgt |
6123027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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