View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_30 (Length: 250)
Name: NF20011_low_30
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 531986 - 531743
Alignment:
| Q |
13 |
aatatgataaaccaaagtttaaattttgaattgcccacatttcatgttcgacaatatctcaaatacaatttacattggtagagaaaacctagaagaaaca |
112 |
Q |
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| T |
531986 |
aatatggtaaaccaaagtttaaattttgaattgtccacatttcatgttcgacaatatctcaaatacaatttacatcggtagagaaaacctagaagaaact |
531887 |
T |
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| Q |
113 |
aggnnnnnnnnn---------cccacattgttacccatgacaaacaagtagtttatcattatttattatcataagaaaatcaaagtatatgtacccaaat |
203 |
Q |
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| T |
531886 |
aggagaaaaagaaaaaaaaaacccataatgttacccatgataaacaagtagtttatcatt---tattatcataagaaaatcaaagtatatgtacccaaat |
531790 |
T |
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| Q |
204 |
accctcactaggaatttgtgcgttgaccacaaatagtagataaaaac |
250 |
Q |
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| T |
531789 |
accctcgctaggaatttgtgcgtttaccacaaatagtagataaaaac |
531743 |
T |
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