View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_low_35 (Length: 235)

Name: NF20011_low_35
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_low_35
NF20011_low_35
[»] chr7 (2 HSPs)
chr7 (15-235)||(38014544-38014764)
chr7 (136-235)||(159446-159543)
[»] chr8 (1 HSPs)
chr8 (136-235)||(24347739-24347837)
[»] chr2 (4 HSPs)
chr2 (137-235)||(29083825-29083921)
chr2 (123-198)||(38433170-38433245)
chr2 (145-235)||(35812624-35812714)
chr2 (135-215)||(8183575-8183654)
[»] chr4 (1 HSPs)
chr4 (135-235)||(23247350-23247448)
[»] chr5 (2 HSPs)
chr5 (134-198)||(681510-681574)
chr5 (123-197)||(8473054-8473125)
[»] chr1 (1 HSPs)
chr1 (144-204)||(24563856-24563916)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 38014764 - 38014544
Alignment:
Q  15 aatagagacttgcactctatgagccacatgcaagactgataggatcctttctttgtgtacaaaagaatttcca-aaaattggacaaaactaaatgatcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  38014764 aatagagacttgcactctatgagccacatgcaagactgataggatcctttctttgtgtacaaaagaatttccaaaaaattggacaaaactgaatgatcaa 38014665  T
Q  114 aagaaggtgtctaactagactaaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaag 213  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014664 aagaaggagtctaactagactaaagattgcaaacaaatgaa-gatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaag 38014566  T
Q  214 atgataagcttgcacacaaggc 235  Q
    ||||||| ||||||||||||||    
T  38014565 atgataaccttgcacacaaggc 38014544  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 159543 - 159446
Alignment:
Q  136 aagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaagatgataagcttgcacacaaggc 235  Q
    ||||||| ||||||||||| ||||  |||||| |||||||||||||||||||||||||| | || ||| ||||| |||||||||  ||||||||||||||    
T  159543 aagattgaaaacaaatgaatgattc-ttattgttgtagagagattgaaagagaagatac-agaaggtagacaatgaagatgatagccttgcacacaaggc 159446  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 24347837 - 24347739
Alignment:
Q  136 aagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaagatgataagcttgcacacaaggc 235  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||| |||| |  |||||| |||||||||| ||||||||||||||    
T  24347837 aagattgctaacaaatgaaggatttattattggtgtagggagattgaaagagttgatac-aaaaggcttacaatgaagatgataaccttgcacacaaggc 24347739  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 29083921 - 29083825
Alignment:
Q  137 agattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaagatgataagcttgcacacaaggc 235  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||  |||||||| |||||| |||| |||||||| |||||    
T  29083921 agattgaaaacaaatgaaggatttcttattggtgtagagagattgaaagagaagat--aaaagggtatacaacaaagataataaacttgcacagaaggc 29083825  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 38433245 - 38433170
Alignment:
Q  123 tctaactagactaaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaa 198  Q
    |||||||||| |||||||||||||  |||||||||||  |||||| ||||| ||||||||||||||||||||||||    
T  38433245 tctaactagaataaagattgcaaatgaatgaaggattccttattgatgtagtgagattgaaagagaagatacaaaa 38433170  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 35812624 - 35812714
Alignment:
Q  145 aacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaag-tatacaataaagatgataagcttgcacacaaggc 235  Q
    |||||||||||||||| |||||||  |||| |||||||||| ||||||||||||    |||||||| |||||||||| ||||||||||||||    
T  35812624 aacaaatgaaggatttcttattggcttagaaagattgaaag-gaagatacaaaaggtatatacaatgaagatgataaccttgcacacaaggc 35812714  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 8183575 - 8183654
Alignment:
Q  135 aaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaagat 215  Q
    ||||||||||||||  ||| | |||| ||||| |||||| |||||| ||||||||||||| |||| |||||| ||||||||    
T  8183575 aaagattgcaaacagctgatgaatttcttatttgtgtagtgagatttaaagagaagatac-aaaaggtatactataaagat 8183654  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 23247448 - 23247350
Alignment:
Q  135 aaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtatacaataaagatgataagcttgcacacaagg 234  Q
    ||||||||||||||| ||||  ||||  ||||| ||| | ||||||||||||||||||||||||  ||||||||| |||||||||| |||||||||||||    
T  23247448 aaagattgcaaacaattgaaa-atttcctattgatgtggtgagattgaaagagaagatacaaaag-gtatacaatgaagatgataaccttgcacacaagg 23247351  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 681510 - 681574
Alignment:
Q  134 taaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaa 198  Q
    ||||||||| || ||||||||| ||||||||||  | ||||||||||||||||||||||||||||    
T  681510 taaagattgtaagcaaatgaagaatttattatttctttagagagattgaaagagaagatacaaaa 681574  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 8473125 - 8473054
Alignment:
Q  123 tctaactagactaaagattgcaaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaa 197  Q
    |||||||||| ||||||||| || |||||||||||||| ||||   |||||||||| ||||||||||||||||||    
T  8473125 tctaactagaataaagattgaaagcaaatgaaggatttcttat---tgtagagagactgaaagagaagatacaaa 8473054  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 24563856 - 24563916
Alignment:
Q  144 aaacaaatgaaggatttattattggtgtagagagattgaaagagaagatacaaaaaagtat 204  Q
    ||||||||||||||||| |||||| |||  || ||||||||||||||||||||||| ||||    
T  24563856 aaacaaatgaaggatttcttattgttgtgaagtgattgaaagagaagatacaaaaacgtat 24563916  T

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