View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_36 (Length: 235)
Name: NF20011_low_36
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 2384610 - 2384418
Alignment:
| Q |
31 |
gtcagttaaaactgtgttccttaatcacaatctgcannnnnnn-atttaacttgctaactgaagttgtaaataatggagttgattataagaaatgcatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2384610 |
gtcagttaaaactgtgttccttaatcacaatctgcattttttttattttacttgctaactgaagttgtaaataatggagttgattataagaaatgcatag |
2384511 |
T |
|
| Q |
130 |
aagtcttcaaaaagacaatttcagtaatattaaatgtatatcggcatgttggagtccaataaatgaaatattagaaaatatgtcatcatttgt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2384510 |
aagtcttcaaaaagacaatttcagtaatattaaatgtatattggcatgttggagtccaataaatgaaatgttagaaaatatgtcatcatttgt |
2384418 |
T |
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