View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20011_low_38 (Length: 209)

Name: NF20011_low_38
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20011_low_38
NF20011_low_38
[»] chr4 (4 HSPs)
chr4 (7-209)||(6619974-6620176)
chr4 (38-135)||(6619876-6619973)
chr4 (21-98)||(6620180-6620257)
chr4 (107-171)||(6619777-6619841)
[»] scaffold0286 (1 HSPs)
scaffold0286 (25-98)||(8113-8186)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 6619974 - 6620176
Alignment:
Q  7 acatcatcaataaaattaacattcttattgacatcttcagaaacagtaacatccgcctcatctcgtccattgcagtgttcaatttctttgtcggttgact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6619974 acatcatcaataaaattaacattcttattgacatcttcagaaacagtaacatccgcctcatctcgtccattgcagtgttcagtttctttgtcggttgact 6620073  T
Q  107 catcgtcactagaaacaatacaatttgtattcactgcatgtgagtgcttatcttcacctggaccactaatattgttattcactggcacatcaatataatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6620074 catcgtcactagaaacaatacaatttgtattcactgcatgtgagtgcttatcttcaccaggaccactaatattgttattcactggcacatcaatataatc 6620173  T
Q  207 acc 209  Q
    |||    
T  6620174 acc 6620176  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 6619876 - 6619973
Alignment:
Q  38 catcttcagaaacagtaacatccgcctcatctcgtccattgcagtgttcaatttctttgtcggttgactcatcgtcactagaaacaatacaatttgta 135  Q
    |||| |||||||||||||||||| ||||| ||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6619876 catcatcagaaacagtaacatcctcctcagctcctccattgcagtgtttggtttctttgtcggttgactcatcatcactagaaacaatacaatttgta 6619973  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 6620180 - 6620257
Alignment:
Q  21 attaacattcttattgacatcttcagaaacagtaacatccgcctcatctcgtccattgcagtgttcaatttctttgtc 98  Q
    ||||| |||||||||||||||| |||||||||||| |||| ||||||||| | ||||||| ||||| |||||||||||    
T  6620180 attaatattcttattgacatctccagaaacagtaatatcctcctcatctcctgcattgcactgttccatttctttgtc 6620257  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 6619777 - 6619841
Alignment:
Q  107 catcgtcactagaaacaatacaatttgtattcactgcatgtgagtgcttatcttcacctggacca 171  Q
    |||| |||||||||||| || ||||| ||||||||||||||||||| ||||||| ||| ||||||    
T  6619777 catcatcactagaaacagtagaatttttattcactgcatgtgagtgtttatctttaccaggacca 6619841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 8186 - 8113
Alignment:
Q  25 acattcttattgacatcttcagaaacagtaacatccgcctcatctcgtccattgcagtgttcaatttctttgtc 98  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||| | ||||||| ||||| |||||||||||    
T  8186 acattcttattgacatctccagaaacagtaatatcctcctcatctcctgcattgcactgttccatttctttgtc 8113  T

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