View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_6 (Length: 495)
Name: NF20011_low_6
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_6 |
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| [»] scaffold0813 (1 HSPs) |
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Alignment Details
Target: scaffold0813 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Original strand, 2653 - 3124
Alignment:
| Q |
12 |
atgaagtagtctaaacctctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatgtaaagaaaccatagttattgttgaacggaagg |
111 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2653 |
atgaagtagtctaaacttctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatataaagaaaccatagttattgttgaacggaagg |
2752 |
T |
|
| Q |
112 |
gttttaacttttataggagcggaggtaattggtagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttt |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2753 |
gttttaacttttataggagcggaggtaattgatagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttc |
2852 |
T |
|
| Q |
212 |
tgttcagaagggaatgagagatattttaatgacagataatattaaatttttataatgttgcaaacattttatggtataaataattggagagaagtcaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853 |
tgttcagaagggaatgagagatattttaatgacagaaaatattaaatttttataatgttgcaaacattttatggtataaataattggagagaagtcaaaa |
2952 |
T |
|
| Q |
312 |
ttgaatgagtggagattttgccccctgtattctcccttccaaggtattgaaccaaaaaagaaagataaacaatcccttcctaacctttttctacattttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2953 |
ttgaatgagtggagattttgccccctgtattctcccttccaaggtattgaaccaaaaaagaaagataaacaatcccttcctaacctttttctacattttc |
3052 |
T |
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| Q |
412 |
tccaattaaagcactatgactttttcaaatggaactgtctattctgatttctaaattccattcaaagttgtg |
483 |
Q |
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| T |
3053 |
tccaattaaagcactatgactttttcaaatggaactgtctattctgatttctaaattccattcaaagttgtg |
3124 |
T |
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Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 6619333 - 6618862
Alignment:
| Q |
12 |
atgaagtagtctaaacctctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatgtaaagaaaccatagttattgttgaacggaagg |
111 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6619333 |
atgaagtagtctaaacttctgtacaaggtaagaacatatatagtctgtatcgaaacatgtgttgaatataaagaaaccatagttattgttgaacggaagg |
6619234 |
T |
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| Q |
112 |
gttttaacttttataggagcggaggtaattggtagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttt |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6619233 |
gttttaacttttataggagcggaggtaattgatagtggtataaaaatagatattttgtctggttgagaggaaagaaacatagataatcttctctttgttc |
6619134 |
T |
|
| Q |
212 |
tgttcagaagggaatgagagatattttaatgacagataatattaaatttttataatgttgcaaacattttatggtataaataattggagagaagtcaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6619133 |
tgttcagaagggaatgagagatattttaatgacagaaaatattaaatttttataatgttgcaaacattttatggtataaataattggagagaagtcaaaa |
6619034 |
T |
|
| Q |
312 |
ttgaatgagtggagattttgccccctgtattctcccttccaaggtattgaaccaaaaaagaaagataaacaatcccttcctaacctttttctacattttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6619033 |
ttgaatgagtggagattttgccccctgtattctcccttccaaggtattgaaccaaaaaagaaagataaacaatcccttcctaacctttttctacattttc |
6618934 |
T |
|
| Q |
412 |
tccaattaaagcactatgactttttcaaatggaactgtctattctgatttctaaattccattcaaagttgtg |
483 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6618933 |
tccaattaaagcactatgactttttcaaatggaactgtctattctgatttctaaattccattcaaagttgtg |
6618862 |
T |
|
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