View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20011_low_9 (Length: 420)
Name: NF20011_low_9
Description: NF20011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20011_low_9 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 6770117 - 6770497
Alignment:
| Q |
14 |
aatatatattgtaaagattaaaaagaaaattcctttgttttctacacaagtacgttttttaatcaagtaaatttacgcaaaatcaattcaagtgcgttta |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6770117 |
aatatatattgtaaagattaaaaagaaaattcctatgttttctccacaagtacgttttttaatcaagtaaatttacgcaaaatcaattcaagtgcgttta |
6770216 |
T |
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| Q |
114 |
tgtaaacttagttcaagtaatgacatatgtagattcttgttttcaagtacattcacacaaacttggttcacatacaacatgtacattataaatatcttga |
213 |
Q |
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| T |
6770217 |
tgtaaacttagttcaagtaatgacatatgtagattcttgttttcaagtacattcacacaaacttggttcacatacaacatgtacattataaatatcttga |
6770316 |
T |
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| Q |
214 |
tcttactcaaatatcttgatcaaataagtacatcacttaaactggatagaagtacgcctacacaaactttacacaaactcagttcaagtacaacatgtaa |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6770317 |
tcttactcaaatatcttggtcaaataagtacatcacttaaactggatagaagtacgcctacacaaactttacacaaactcagttcaagtacaacatgtaa |
6770416 |
T |
|
| Q |
314 |
attatgagttcaggggcggaacca-cacccggcgaccccgggcatttgcctgggctcaataaatattttctttatattttt |
393 |
Q |
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| T |
6770417 |
attatgagttcaggggcggaaccaccacccggcgaccccgggcatttgcctgggctcaatcaatattttctttatattttt |
6770497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 3106733 - 3106874
Alignment:
| Q |
186 |
tacaacatgtacattataaatatcttgatcttactcaaatatcttgatcaaataagtacat--cacttaaactggatagaagtacgcctacacaaacttt |
283 |
Q |
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| T |
3106733 |
tacaacatgtacattacatgtttctatatcttactcaaat--ctagatcaaataagtacattacacgtaaactggattcaagtacacctacacaaacttt |
3106830 |
T |
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| Q |
284 |
acacaaactcagttca-----agtacaacatgtaaattatgagtt |
323 |
Q |
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| T |
3106831 |
acacaa-ctcagttcaattcaagtacaacatgtgcattatgagtt |
3106874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 14088694 - 14088745
Alignment:
| Q |
338 |
cacccggcgaccccgggcatttgcctgggctcaataaatattttctttatat |
389 |
Q |
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| T |
14088694 |
cacccggcgaccccgggcacttgcccgggctcaatcgatactttctttatat |
14088745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 14398712 - 14398763
Alignment:
| Q |
338 |
cacccggcgaccccgggcatttgcctgggctcaataaatattttctttatat |
389 |
Q |
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| T |
14398712 |
cacccggcgaccccgggcacttgcccgggctcaatcgatactttctttatat |
14398763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 6770705 - 6770742
Alignment:
| Q |
281 |
tttacacaaactcagttcaagtacaacatgtaaattat |
318 |
Q |
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| T |
6770705 |
tttacacacactcagttcaagtacaacatgtacattat |
6770742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 1338369 - 1338425
Alignment:
| Q |
76 |
tcaagtaaatttacgcaaaatcaattcaagtgcgtttatgtaaacttagttcaagta |
132 |
Q |
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| T |
1338369 |
tcaagtatgtttacgtaaattcaattcaagtacgtttatgtaaacttagttcaagta |
1338425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 46502 - 46431
Alignment:
| Q |
322 |
ttcaggggcggaaccac-acccggcgaccccgggcatttgcctgggctcaataaatattttctttatatttt |
392 |
Q |
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|||||||| ||| |||| ||| || ||||||||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
46502 |
ttcaggggtggagccaccacctggtgaccccgggcatttgcccgggctcaatcgatactttctttatatttt |
46431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 2983703 - 2983653
Alignment:
| Q |
338 |
cacccggcgaccccgggcatttgcctgggctcaataaatattttctttata |
388 |
Q |
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| T |
2983703 |
cacccggcgaccccgggattttgcccgggctcaatcgatattttctttata |
2983653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 14051204 - 14051273
Alignment:
| Q |
323 |
tcaggggcggaaccac-acccggcgaccccgggcatttgcctgggctcaataaatattttctttatattt |
391 |
Q |
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||||||| |||||||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| |
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| T |
14051204 |
tcaggggtggaaccaccacccggcgagtccgggcacttgcacgggctcaatcagtattttctttatattt |
14051273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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