View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_high_1 (Length: 774)
Name: NF20012_high_1
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 723; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 13 - 759
Target Start/End: Original strand, 38784225 - 38784970
Alignment:
| Q |
13 |
cataggacagtgcaagaagaggcaactccaaattacccttggcagtggcagtgaagattcatctgagaatatggagcagtggatcaaaacagatgcggac |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784225 |
cataggacaatgcaagaagaggcaactccaaattacccttggcagtggcagtgaagattcatctgagaatatggagcagtggatcaaaacagatgcggac |
38784324 |
T |
|
| Q |
113 |
tgtaagcatacgtacatacatacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784325 |
tgtaagcatacgtacatacatacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattca |
38784424 |
T |
|
| Q |
213 |
attgaagtaattaagcagcatagcataaacaaaataaaatgaaaactcaagtgcatggctaagattttggaacttgttttaaattgcagacttagtgttg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784425 |
attgaagtaattaagcagcatagcataaacaaaataaaatgaaaactcaagcgcatggctaagattttggaacttgttttaaattgcagacttagtgttg |
38784524 |
T |
|
| Q |
313 |
gagctctaaaaggcaaagggcgaacggaattgggctctctccacgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784525 |
gagctctaaaaggcaaagggcgaacggaattgggctctctccgcgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccag |
38784624 |
T |
|
| Q |
413 |
taattggttttgtttttctttaatgtgtgttaatttcaaacgtagaaccttatggtttgtgtctttagttaattatttgaggttgttgtttaagagtgtt |
512 |
Q |
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| T |
38784625 |
taattggttttgtttttctttaatgtgtgttaatttcaaacgtagaaccttatgttttgtgtctttagttaattatttgaggttgttgtttaagagtgtt |
38784724 |
T |
|
| Q |
513 |
aagagtctttccagatatggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagca |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784725 |
aagagtctttccagatatggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagca |
38784824 |
T |
|
| Q |
613 |
attaaaataagatttggtttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataa |
712 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784825 |
att-aaataagatttggtttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataa |
38784923 |
T |
|
| Q |
713 |
aattcagcttcactttcagttctcctatacatgatgcgagagatttt |
759 |
Q |
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| T |
38784924 |
aattcagcttcactttcagttctcctatacatgatgcgagagatttt |
38784970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 593 - 649
Target Start/End: Complemental strand, 52929753 - 52929697
Alignment:
| Q |
593 |
tgaatgtaaagaaggaagcaattaaaataagatttggtttatggcttcacatgatga |
649 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
52929753 |
tgaatgtaaagaaggaagcaattaaaataagattctcttgatggcttcacatgatga |
52929697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 730
Target Start/End: Complemental strand, 52929696 - 52929631
Alignment:
| Q |
666 |
aagtttaatgttcaaaagtaaggtata-catagttgcgacagtcataaaattcagcttcactttca |
730 |
Q |
| |
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|||||||||||| |||||||||||||| |||| ||| ||| || ||||||||||| ||||| |||| |
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| T |
52929696 |
aagtttaatgttgaaaagtaaggtataccataattgtgacggttataaaattcagtttcacattca |
52929631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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