View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20012_high_14 (Length: 281)

Name: NF20012_high_14
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20012_high_14
NF20012_high_14
[»] chr5 (11 HSPs)
chr5 (123-271)||(3077251-3077399)
chr5 (127-203)||(8609203-8609279)
chr5 (7-57)||(3077136-3077186)
chr5 (130-203)||(8609932-8610005)
chr5 (136-203)||(27100353-27100420)
chr5 (122-192)||(42948159-42948229)
chr5 (124-201)||(19186963-19187040)
chr5 (123-200)||(19186432-19186510)
chr5 (136-203)||(27099551-27099618)
chr5 (124-196)||(4927753-4927825)
chr5 (123-175)||(23244357-23244409)
[»] chr8 (7 HSPs)
chr8 (123-205)||(39297411-39297493)
chr8 (123-203)||(5390140-5390220)
chr8 (122-202)||(39296738-39296822)
chr8 (122-183)||(5389670-5389731)
chr8 (219-278)||(39297367-39297426)
chr8 (124-181)||(42104612-42104669)
chr8 (125-169)||(42105243-42105287)
[»] chr2 (5 HSPs)
chr2 (127-203)||(529586-529662)
chr2 (122-195)||(528908-528981)
chr2 (129-202)||(18867097-18867170)
chr2 (123-173)||(8194276-8194326)
chr2 (136-203)||(29156163-29156230)
[»] chr6 (4 HSPs)
chr6 (122-203)||(13225195-13225276)
chr6 (123-203)||(11324750-11324830)
chr6 (123-203)||(13220880-13220960)
chr6 (130-203)||(30525638-30525711)
[»] chr3 (13 HSPs)
chr3 (122-203)||(40872920-40873001)
chr3 (123-203)||(15274023-15274103)
chr3 (124-203)||(40877243-40877322)
chr3 (122-203)||(15269702-15269783)
chr3 (122-202)||(31897948-31898028)
chr3 (122-202)||(31913657-31913737)
chr3 (122-202)||(31947305-31947385)
chr3 (147-205)||(36511315-36511373)
chr3 (138-202)||(23516935-23516999)
chr3 (136-203)||(33639624-33639691)
chr3 (143-182)||(36510775-36510814)
chr3 (136-179)||(40144848-40144891)
chr3 (136-198)||(55203685-55203747)
[»] chr4 (5 HSPs)
chr4 (130-203)||(22405307-22405380)
chr4 (137-203)||(42576614-42576680)
chr4 (123-173)||(53994450-53994500)
chr4 (123-173)||(53993662-53993712)
chr4 (136-189)||(15539847-15539900)
[»] chr7 (1 HSPs)
chr7 (123-203)||(12263333-12263413)
[»] chr1 (2 HSPs)
chr1 (136-203)||(19990287-19990354)
chr1 (122-203)||(29981267-29981348)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 3077251 - 3077399
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggtagttttcaaaaatatat 222  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3077251 gagaagggatgcgttgactccaagagcaagtataaagagttactccaaatcataaccattgattttaatattaattaatgggtagttttcaaaaaaatat 3077350  T
Q  223 taattaatgggtgtgattaattgctattgattctcattattaggttaat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3077351 taattaatgggtgtgattaattgctattgattctcattattaggttaat 3077399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 8609203 - 8609279
Alignment:
Q  127 agggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||    
T  8609203 agggatccattgactccaagagtaagtataaatagttactccaaatcttagccattaattttaatattaattgatgg 8609279  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 3077136 - 3077186
Alignment:
Q  7 gagatgaacaaaaataatggctatagacaaacttgttcaagtgtataattg 57  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3077136 gagatgaacaaaaataatggctatagacaaatttgttcaagtgtataattg 3077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 8610005 - 8609932
Alignment:
Q  130 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||| ||||||| ||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||| ||||    
T  8610005 gatccattgactcaaagagtaagcataaagagttactccaaatcttgaccattaattttaatattaattcatgg 8609932  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 27100420 - 27100353
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||||||| | |||| |||||||||| ||| || |||||||||||||||| |||||||||    
T  27100420 ttgactccaagagtaactctaaaaagttactccacatcttagccattgattttaatatgaattaatgg 27100353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 42948229 - 42948159
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaata 192  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||| |||| | ||| || |||||||||    
T  42948229 tgagaagggatccattgactccaagagtaagtctaaagagttactcccaatcatgacctttaattttaata 42948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 19187040 - 19186963
Alignment:
Q  124 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaat 201  Q
    |||||| |||| ||||||||||||||||||  ||| | ||||||| |||| ||||||||||| || ||||||||||||    
T  19187040 agaaggaatccattgactccaagagtaagtcaaaagacttactcctaatcataaccattgatcttcatattaattaat 19186963  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 19186432 - 19186510
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaa-ccattgattttaatattaattaa 200  Q
    |||||| ||||  |||||||||||||||||| |||| | |||||||||||| ||| || |||||||||||| |||||||    
T  19186432 gagaagagatcaattgactccaagagtaagtctaaagacttactccaaatcttaaccctttgattttaatagtaattaa 19186510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 27099551 - 27099618
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||||||| | |||| |||||||||| ||   |||| |||||||||||| ||||||||||    
T  27099551 ttgactccaagagtaactctaaagagttactccacattacaacccttgattttaatagtaattaatgg 27099618  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 4927753 - 4927825
Alignment:
Q  124 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaa 196  Q
    |||| |||||| |||| ||||||| ||||| |||| | ||||||| |||| | ||||||| ||||||||||||    
T  4927753 agaatggatccattgattccaagattaagtttaaagacttactcccaatcttgaccattggttttaatattaa 4927825  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 23244409 - 23244357
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcct 175  Q
    ||||||||||   |||||||||||||||||| |||| |||||||||| |||||    
T  23244409 gagaagggatatattgactccaagagtaagtctaaagagttactccacatcct 23244357  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 39297493 - 39297411
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggt 205  Q
    |||||||||||| |||||| ||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  39297493 gagaagggatccattgacttcaatagtaagtataaagaattattccaaatcctaaccattgattttaatattaattaatgggt 39297411  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 5390220 - 5390140
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||||| ||||||||||||||    
T  5390220 gagaagggatccattgactcctagagtaagtctaaagacttactccaaatcataaccattgattttgatattaattaatgg 5390140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 39296738 - 39296822
Alignment:
Q  122 tgagaagggatccgttgactccaagagta----agtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    ||||||| ||||| |||||||||||||||    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  39296738 tgagaagtgatccattgactccaagagtaagtaagtataaagagttactccaaatcctaacgattgatttaaatattaattaatg 39296822  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 5389670 - 5389731
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattg 183  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||||    
T  5389670 tgagaagggatccattgactccaagagtaagtctaaagacttactccaaatcataaccattg 5389731  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 39297426 - 39297367
Alignment:
Q  219 atattaattaatgggtgtgattaattgctattgattctcattattaggttaatatactcc 278  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| | ||||||||||||    
T  39297426 atattaattaatgggtgtgatgaattgctattaatcctcattatttgattaatatactcc 39297367  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 42104612 - 42104669
Alignment:
Q  124 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccat 181  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||| ||| |||||||    
T  42104612 agaagggatccgttgactccaggagtaagtgtaaagacttactccacatcttaaccat 42104669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 42105287 - 42105243
Alignment:
Q  125 gaagggatccgttgactccaagagtaagtataaatagttactcca 169  Q
    |||||||||||||||||||| |||||||| |||| | ||||||||    
T  42105287 gaagggatccgttgactccaggagtaagtgtaaagacttactcca 42105243  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 529662 - 529586
Alignment:
Q  127 agggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||| ||||    
T  529662 agggatccattgactccaagagtaagtataaagacttactccaaatcttagccattaattttaatattaattgatgg 529586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 528908 - 528981
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatatta 195  Q
    ||||||||||||| | ||||||||||||||||||||| | |||||||||||| | |||||| ||||||||||||    
T  528908 tgagaagggatccatggactccaagagtaagtataaagacttactccaaatcttgaccattaattttaatatta 528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 18867097 - 18867170
Alignment:
Q  129 ggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    ||||||||| | |||||||||||||||||| ||||| ||||||||||||  ||| |||||||| ||||||||||    
T  18867097 ggatccgttaattccaagagtaagtataaaaagttattccaaatcctaatgattaattttaatgttaattaatg 18867170  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 8194326 - 8194276
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 173  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  8194326 gagaagggatccattgactccaagagtaagtctaaagagttactccaaatc 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 29156163 - 29156230
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||||||| |  ||| |||||||||||||||| ||| || ||  ||||||||||||||||    
T  29156163 ttgactccaagagtaactcaaaagagttactccaaatcctgacccttcatcctaatattaattaatgg 29156230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 13225276 - 13225195
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  13225276 tgagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 13225195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 11324750 - 11324830
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  11324750 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 11324830  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 13220880 - 13220960
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  13220880 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 13220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 30525638 - 30525711
Alignment:
Q  130 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||| |||||||||| ||||||| |||| |||||||||||| | | |||| | ||||||||| ||||||||||    
T  30525638 gatccattgactccaatagtaagtgtaaagagttactccaaaccatgaccactcattttaataataattaatgg 30525711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 40872920 - 40873001
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  40872920 tgagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 40873001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 15274103 - 15274023
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  15274103 gagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 15274023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 40877322 - 40877243
Alignment:
Q  124 agaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||| |||||||||||||||||| |||| | |||||||||||| | |||||| ||||||||  ||||||||||    
T  40877322 agaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaattataattaatgg 40877243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 15269702 - 15269783
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||||| |||||||||||||||||| |||| | ||||| |||||| | |||||| ||||||||  ||||||||||    
T  15269702 tgagaagggatccattgactccaagagtaagtctaaacacttacttcaaatcatgaccattcattttaattataattaatgg 15269783  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 31898028 - 31897948
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31898028 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31897948  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 31913737 - 31913657
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31913737 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31913657  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 31947385 - 31947305
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    |||| |||||||| ||||||| ||||||||||| ||| |||||||||||||| | ||| |||| | |||||||||||||||    
T  31947385 tgaggagggatccattgactctaagagtaagtagaaagagttactccaaatcatgacccttgaatctaatattaattaatg 31947305  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 36511373 - 36511315
Alignment:
Q  147 agtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgggt 205  Q
    |||||||||||| || |||||||||| |||||| |||||||| ||||||||||||||||    
T  36511373 agtaagtataaagagatactccaaattctaacctttgattttgatattaattaatgggt 36511315  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 23516999 - 23516935
Alignment:
Q  138 gactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatg 202  Q
    |||||||||||||| | |||| |||||||||||||| | |||||| ||| |||| ||||||||||    
T  23516999 gactccaagagtaaatgtaaagagttactccaaatcttgaccattaattgtaatcttaattaatg 23516935  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 33639691 - 33639624
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||||||||| |||| | |||||||| ||| ||||| || ||||||| | ||||||||||    
T  33639691 ttgactccaagagtaagtctaaagacttactccagatcttaacccttcattttaaaaataattaatgg 33639624  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 36510775 - 36510814
Alignment:
Q  143 caagagtaagtataaatagttactccaaatcctaaccatt 182  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  36510775 caagagtaattataaagagttactccaaatcctaaccatt 36510814  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 40144891 - 40144848
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaacc 179  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||    
T  40144891 ttgacttcaagagtaagtctaaagagttactccaaatcctaacc 40144848  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 55203747 - 55203685
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaatt 198  Q
    ||||||| |||| |||||||||| |||||||||||||  |||||||| ||| | |||||||||    
T  55203747 ttgactctaagaataagtataaagagttactccaaattttaaccattaattgtgatattaatt 55203685  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 22405380 - 22405307
Alignment:
Q  130 gatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||| |||||| ||||||||||| |||||| |||||||||||| | |||||| ||||||||| ||||||||||    
T  22405380 gatccattgacttcaagagtaagtctaaatacttactccaaatcttgaccattcattttaataataattaatgg 22405307  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 42576680 - 42576614
Alignment:
Q  137 tgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||||||||| |||| | |||||||||||  | ||| |||||||||||| ||||||||||    
T  42576680 tgactccaagagtaagtttaaaaacttactccaaatattgacccttgattttaatagtaattaatgg 42576614  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 53994500 - 53994450
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 173  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||||||||    
T  53994500 gagaagggatccattgactccaggagtaagtctaaagagttactccaaatc 53994450  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 53993662 - 53993712
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatc 173  Q
    |||||||||||| || ||||||||||||||| |||| ||||||||| ||||    
T  53993662 gagaagggatccattaactccaagagtaagtctaaagagttactcccaatc 53993712  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 15539847 - 15539900
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgatttta 189  Q
    |||||||||||||||| |||||| |||||||||| ||||| ||| || ||||||    
T  15539847 ttgactccaagagtaactataaagagttactccacatcctcacccttcatttta 15539900  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 12263413 - 12263333
Alignment:
Q  123 gagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||| |||||||||||||||||| |||| | ||||| |||||| | |||||| ||||||||  ||||||||||    
T  12263413 gagaagggatccattgactccaagagtaagtctaaacacttactacaaatcatgaccattcattttaattataattaatgg 12263333  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 19990287 - 19990354
Alignment:
Q  136 ttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    |||||||||||||||||| |||| | ||||||||||||  |||| || || |||||| ||||||||||    
T  19990287 ttgactccaagagtaagtctaaagacttactccaaatctaaacccttcatcttaataataattaatgg 19990354  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 29981267 - 29981348
Alignment:
Q  122 tgagaagggatccgttgactccaagagtaagtataaatagttactccaaatcctaaccattgattttaatattaattaatgg 203  Q
    ||||||||||||| ||||||| |||||||||| |||| | |||||||  ||| ||||| |  |||||| ||||| |||||||    
T  29981267 tgagaagggatccattgactctaagagtaagtgtaaagacttactccgcatcttaaccctctattttattattagttaatgg 29981348  T

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