View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_high_17 (Length: 238)
Name: NF20012_high_17
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 12552895 - 12552672
Alignment:
| Q |
1 |
tgatttacacatgaaatgcttctcattttgctataatcaagatcttgtaaacttgattcaccttttgaaatatcctgctttgaagactcactttgtccat |
100 |
Q |
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| T |
12552895 |
tgatttacacatgaaatgcttctcattttgctataatcaagatcttgtaaacttgattcaccttttgaaatatcctgctttgaagactcactttgtccat |
12552796 |
T |
|
| Q |
101 |
aagagtataagctagggttcatagcatattcttcaccaccactcaaacctaatggctcgttagtttgaattgtgtttgttccattcaaaaacaaattgaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552795 |
aagagtataaactagggttcatagcatattcttcaccaccactcaaacctaatggctcattagtttgaattgtgtttgttccattcaaaaacaaattgaa |
12552696 |
T |
|
| Q |
201 |
tggattaaagctagggttaatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
12552695 |
tggattaaagctagggttaatatt |
12552672 |
T |
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