View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20012_high_5 (Length: 450)

Name: NF20012_high_5
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20012_high_5
NF20012_high_5
[»] chr1 (7 HSPs)
chr1 (176-352)||(39071667-39071844)
chr1 (377-423)||(39071843-39071889)
chr1 (15-67)||(27840307-27840359)
chr1 (15-59)||(50293655-50293699)
chr1 (178-249)||(50975769-50975840)
chr1 (31-67)||(41323378-41323414)
chr1 (15-63)||(51387129-51387177)
[»] chr8 (5 HSPs)
chr8 (216-423)||(44656560-44656769)
chr8 (15-67)||(16367864-16367916)
chr8 (12-67)||(44656366-44656421)
chr8 (15-67)||(42308123-42308175)
chr8 (15-59)||(771642-771686)
[»] chr2 (1 HSPs)
chr2 (197-423)||(4455787-4456016)
[»] chr6 (2 HSPs)
chr6 (200-423)||(31446785-31447011)
chr6 (9-95)||(31447108-31447192)
[»] chr7 (1 HSPs)
chr7 (57-108)||(32524607-32524658)
[»] chr5 (2 HSPs)
chr5 (15-69)||(4082574-4082628)
chr5 (15-69)||(16349715-16349769)
[»] chr3 (1 HSPs)
chr3 (14-62)||(53693211-53693259)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 176 - 352
Target Start/End: Original strand, 39071667 - 39071844
Alignment:
Q  176 ttggatacacaacttttcaaaattgcacgttaaggat-tgtaataactaaatacggcacttaataacggtgaacacgtgcctttcacaatttagcataac 274  Q
    |||||||||||||||||||| |||||| ||||||||| |  ||  ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  39071667 ttggatacacaacttttcaagattgcaagttaaggatatacaaacactaaatacggcacttaataatggtgaaaatgtgcctttcacaatttagcataac 39071766  T
Q  275 ataatgcatcaaccatgtcattatatagacttggaatacatgtattgaaggatttttcatgaaaaacattgacatgaa 352  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  39071767 ataatgcatcaactatgtcattatatagactttgaatacatgtgttgaaggatttttcctgaaaaacattgacatgaa 39071844  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 39071843 - 39071889
Alignment:
Q  377 aacctgctctgatatgcacatagtaatagtaaacagatgcagttaat 423  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  39071843 aacctgctctgatatgcacatagtaatattaaacagatgcagttaat 39071889  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 27840307 - 27840359
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacatta 67  Q
    ||||| |||||||||  |||||||||||||||||| |||||||||||||||||    
T  27840307 actagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta 27840359  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 50293699 - 50293655
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagttta 59  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagttta 50293655  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 50975840 - 50975769
Alignment:
Q  178 ggatacacaacttttcaaaattgcacgttaaggattgtaataactaaatacggcacttaataacggtgaaca 249  Q
    ||||||||||||| |||| ||||||||| ||  |||  ||||||||||||||||  ||||||| ||||||||    
T  50975840 ggatacacaacttgtcaatattgcacgtgaataattacaataactaaatacggcgattaataatggtgaaca 50975769  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 41323378 - 41323414
Alignment:
Q  31 atgctgtcgcacgggtcatatatagtttaaaacatta 67  Q
    |||||| |||||||||||||||||||| |||||||||    
T  41323378 atgctgccgcacgggtcatatatagttaaaaacatta 41323414  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaac 63  Q
    ||||| |||||||||  ||||| |||||||||||||||||||| |||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 216 - 423
Target Start/End: Original strand, 44656560 - 44656769
Alignment:
Q  216 aataactaaatacggcacttaataacggtgaacacgtgcctttcacaatttagcataacataatgcatcaaccatgtcattatatagacttggaatacat 315  Q
    |||||||||  ||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||  |||||| || || |||||| ||| |||    
T  44656560 aataactaaccacgacacttgataacggtgaactcgtgcctttcacaatttagcataacaaaatgcataaaatatgtcactacatggacttgaaattcat 44656659  T
Q  316 gtattgaaggatttttcat-gaaaaacattgacatgaaaacatgctcacttaggtcccaataaac-ctgctctgatatgcacatagtaatagtaaacaga 413  Q
     ||| || ||||||||  | ||    |||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||| |    
T  44656660 ctatggatggattttttctagattgtcattgacatgaaaatatgctcactttggtcccaataaaatctgctctgatatgcacattgtaatagtaaacaca 44656759  T
Q  414 tgcagttaat 423  Q
    |||| |||||    
T  44656760 tgcacttaat 44656769  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 16367916 - 16367864
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacatta 67  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||||||||||    
T  16367916 actagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 44656366 - 44656421
Alignment:
Q  12 tatactagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacatta 67  Q
    ||||||||||||||||||   |||  ||||||||||||||||||||||||||||||    
T  44656366 tatactagttcgtctacccgcgctaccgcacgggtcatatatagtttaaaacatta 44656421  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacatta 67  Q
    ||||| ||||| |||| ||||| |||||||||||||||||||| |||||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 771686 - 771642
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagttta 59  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||    
T  771686 actaggtcgtctacccgtgctgccgcacgggtcatatatagttta 771642  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 423
Target Start/End: Complemental strand, 4456016 - 4455787
Alignment:
Q  197 attgcacgttaaggattgtaataactaaatacggcacttaataacggtgaacacgtgcctttcacaatttagcataacataatgcatcaaccatgtcatt 296  Q
    ||||||||||||| |||  |||||||||  ||| ||||| |||||||||||| | |||||||||||||||||||||||| ||||||| ||  |||||| |    
T  4456016 attgcacgttaagaatttcaataactaaccacgacacttgataacggtgaactcatgcctttcacaatttagcataacaaaatgcataaaatatgtcact 4455917  T
Q  297 atatagacttggaatacatgtattgaaggattttt--catgaaaaacattgacatgaaaacatgctcacttaggtcccaataaa-cctgctctgatatgc 393  Q
    | || |||||| ||| ||| ||| || | ||||||  |  ||    |||||||||||||| |||||||||| |||||||||||| ||||||||||||||     
T  4455916 acatggacttgaaattcatctatggatgaatttttttctagattgtcattgacatgaaaatatgctcactttggtcccaataaaacctgctctgatatgt 4455817  T
Q  394 acatagtaatagtaaacagatgcagttaat 423  Q
    |||| ||||||||||||| ||||| |||||    
T  4455816 acattgtaatagtaaacacatgcatttaat 4455787  T

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Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 200 - 423
Target Start/End: Complemental strand, 31447011 - 31446785
Alignment:
Q  200 gcacgttaaggattgtaataactaaatacggcacttaataacggtgaacacgtgcctttcacaatttagcataacataatgcatcaaccatgtcattata 299  Q
    |||||||||| |||  |||||||||  ||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||  |||||| || |    
T  31447011 gcacgttaagaatttcaataactaaccacgacacttgataacggtgaactcgtgcctttcacaatttagcataacaaaatgcataaaatatgtcactaca 31446912  T
Q  300 tagacttggaatacatgtattgaagga-tttttcatgaaaaacattgacatgaaaacatgctcacttaggt-cccaat-aaacctgctctgatatgcaca 396  Q
    | |||||| ||| ||| ||| || ||| ||||||  ||    ||| |||||||||| |||||||||| ||| |||||| ||| |||||||||||||||||    
T  31446911 tggacttgaaattcatctatggatggattttttctagattgtcatagacatgaaaatatgctcactttggtgcccaataaaatctgctctgatatgcaca 31446812  T
Q  397 tagtaatagtaaacagatgcagttaat 423  Q
    | ||||||||||||| ||||| |||||    
T  31446811 ttgtaatagtaaacacatgcacttaat 31446785  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 31447192 - 31447108
Alignment:
Q  9 gattatactagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacattattacttaaaaaataaataataatcgtat 95  Q
    ||||| |||||||||||||||   |||  | ||||||||||||||||||||||||||||||  | || ||||| |||||||||||||    
T  31447192 gattagactagttcgtctacccgcgctaccacacgggtcatatatagtttaaaacattatt--tgaagaaatatataataatcgtat 31447108  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 32524658 - 32524607
Alignment:
Q  57 ttaaaacattattacttaaaaaataaataataatcgtatctattatttgaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32524658 ttaaaacattattacttaaaaaataaataataatcgtatctattatttgaga 32524607  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacattatt 69  Q
    ||||| ||||| |||  ||||| |||||||||||||||||||| |||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 4082574  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 16349715 - 16349769
Alignment:
Q  15 actagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaacattatt 69  Q
    ||||| ||||| |||  ||||| |||||||||||||||||||| |||||||||||    
T  16349715 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 16349769  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 53693259 - 53693211
Alignment:
Q  14 tactagttcgtctacctatgctgtcgcacgggtcatatatagtttaaaa 62  Q
    |||||| |||||||||  ||||| ||||| |||||||||||||||||||    
T  53693259 tactagatcgtctacccgtgctgccgcacaggtcatatatagtttaaaa 53693211  T

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