View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_high_9 (Length: 390)
Name: NF20012_high_9
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 660403 - 660039
Alignment:
| Q |
5 |
ggtagattattctgcatgggtttatccctttgaagttgctttcatgcactcttctacaaataggaaactctacattgtggacaatattgttgatcttttc |
104 |
Q |
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| T |
660403 |
ggtagcttattctgcatgggtttatccctttgaagttgctttcatgcactcttctacaaataggaaactctacattgtggacaatattgttgatcttttc |
660304 |
T |
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| Q |
105 |
ttcgctgttgatattgttttgacattcttcgtcgcatacgttgatggaacaactcatctacttgtcagagattccnnnnnnnttgttgtcaggtaatttc |
204 |
Q |
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| T |
660303 |
ttcgctgttgatattgttttgacattcttcgtcgcatacgtagatggaacaactcatctacttgtcagagattccaaaaaaattgttgtcaggtaatttc |
660204 |
T |
|
| Q |
205 |
taaaccacttattacttaattactttttccattaattcaaaccttatattaattattaattcattttcaacctctgtctttatatggagaaaatcagaaa |
304 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
660203 |
taaaccacttattaattaattactttttccattaattcaaaccttatattaattattaattcattttcaacctctgtctttatattgagaaaatcagaaa |
660104 |
T |
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| Q |
305 |
gaaaactatttatgtagcaatctacaaatatttatgcaaacttctaaaataatggatagtgtacg |
369 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
660103 |
gaaaactatttttgtagcaatctacaaatatttatgcaaacgtctaaaataatggatagtgtacg |
660039 |
T |
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