View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20012_low_11 (Length: 379)
Name: NF20012_low_11
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 10565844 - 10566213
Alignment:
| Q |
1 |
ttgctggtgagataaactgatatttttatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
10565844 |
ttgctggtgagataaactgatatttttatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttg |
10565943 |
T |
|
| Q |
101 |
catttaaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtgctcaaactcataattagcaattcagcttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10565944 |
catttaaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtgctcaaactcataattagcaattcagcttgat |
10566043 |
T |
|
| Q |
201 |
gcacagttgttaagaaacttattggtcaagcttgtatcacatgtggcaatgtttagtttaccaatttggttagcagtatttgtgtaattttcctccaacc |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10566044 |
gcacagttgttaagaaacttattggccaagcatgtatcacatgtggcaatgtttagtttaccgatttggttagcagtatttgtgtaattttcctccaacc |
10566143 |
T |
|
| Q |
301 |
tacgagtttctttaaataagtaatgttgcactgcttttctaattcaatgaactgatacttctcccatatt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10566144 |
tacgagtttctttaaataagtaatgttgcactgcttttctaattcaatgaactgatacttctcccatatt |
10566213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 10581836 - 10582189
Alignment:
| Q |
1 |
ttgctggtgagataaactgatatttttatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttg |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
10581836 |
ttgccggtgagataaactgatatttttatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttg |
10581935 |
T |
|
| Q |
101 |
catttaaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtgctcaaactcataattagcaattcagcttgat |
200 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
10581936 |
catttaatattcctaaacttcaaaatacaatggtaataatggatttctttttgatttgaatttcaggtgctcaaacttgtaattagcaattcagcttgat |
10582035 |
T |
|
| Q |
201 |
gcacagttgttaagaaacttattggtcaagcttgtatcacatgtggcaatgtttagtttaccaatttggttagcagtatttgtgtaattttcctccaacc |
300 |
Q |
| |
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|| ||||| ||| ||||||||| ||||||||||| | |||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
10582036 |
gcgcagtttttacgaaacttataggtcaagcttgaagcacatgtgacaatgtttagtttacccatttggttagcagtatttgtgt-attttcctccaacc |
10582134 |
T |
|
| Q |
301 |
tacgagtttctttaaataagtaatgttgcactgcttttctaattcaatgaactga |
355 |
Q |
| |
|
|| | ||| |||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
10582135 |
taggcgttgctttaaataaataatgttgcactgcttttctaattcaataaactga |
10582189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 10612554 - 10612718
Alignment:
| Q |
4 |
ctggtgagataaactgatatttt--tatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttgc |
101 |
Q |
| |
|
|||||||||||| |||| ||||| ||| | |||| ||||||||||||| ||| || ||| ||||||| | ||||||||||||||||| |||| ||| |
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|
| T |
10612554 |
ctggtgagataacctgacatttttatatatttatttgaatcataactaactcaataattgtttatgga---ctaatttgatttttatcatcttattgtgc |
10612650 |
T |
|
| Q |
102 |
attt-aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggt |
168 |
Q |
| |
|
|||| ||| |||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
10612651 |
atttcaaatttcctaaacttcaaaatataatagtaataatggccttcttcttgatttgaatttcaggt |
10612718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10746400 - 10746318
Alignment:
| Q |
1 |
ttgctggtgagataaactgatatttt-tatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgat |
82 |
Q |
| |
|
||||||||||||||||| | ||||| |||| |||| ||||||||||||| |||||| ||| ||||| |||||| ||||||| |
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|
| T |
10746400 |
ttgctggtgagataaacataaattttatatgcttatttgaatcataactaactcattaattgcttatgcaattataatttgat |
10746318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 10716322 - 10716250
Alignment:
| Q |
33 |
tattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttgcattt |
105 |
Q |
| |
|
|||| |||| |||||||| || || ||| |||||||||||| ||||||| ||||||||| |||| ||||||| |
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|
| T |
10716322 |
tatttgaataataactaactctataattgcttatggaattataatttgatctttatcatcttattgtgcattt |
10716250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 11048203 - 11048127
Alignment:
| Q |
106 |
aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtgctcaaactcataa |
182 |
Q |
| |
|
|||||| |||| ||||||||||||| || ||||| ||| ||||||||||||||||||||| ||| |||||||| |
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|
| T |
11048203 |
aaaatttctaacctacaaaatacaaaggcaataacaagcttcctcttgatttgaatttcaggtgttcacactcataa |
11048127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 12949441 - 12949606
Alignment:
| Q |
3 |
gctggtgagataaactgatatttttatgtg--tattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttg |
100 |
Q |
| |
|
||||||||||| |||||||||| |||| || |||| |||||||||| || |||||| ||| ||||| ||||| |||| |||||||||||| |||| || |
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|
| T |
12949441 |
gctggtgagatgaactgatattcttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattttatttttatcatcttattgtg |
12949540 |
T |
|
| Q |
101 |
cattt-aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggt |
168 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||| |
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|
| T |
12949541 |
catttcaaaattcctagactacaaaatataatggtaataatg---accttcttgattttaatttcaggt |
12949606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 18555918 - 18556071
Alignment:
| Q |
15 |
aactgatatttttat--gtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttgcattt-aaaatt |
111 |
Q |
| |
|
|||||||||| |||| || |||| ||||||||||||| |||||| ||| ||||||||||| |||| |||||||||||| |||| ||||||| |||||| |
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|
| T |
18555918 |
aactgatattcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaatt |
18556017 |
T |
|
| Q |
112 |
cctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggt |
168 |
Q |
| |
|
|| ||||||||||||| |||||||||||| | ||||||||||| |||||||||| |
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|
| T |
18556018 |
cccaaactacaaaatataatggtaataat---taccttcttgattttaatttcaggt |
18556071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 12958932 - 12959065
Alignment:
| Q |
33 |
tattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttgcattt-aaaattcctaaactacaaaatacaat |
131 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||| |||| |||||||||||| |||| ||||||| |||||||| |||||| |||||| ||| |
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|
| T |
12958932 |
tatttgaatcataactaactcattaattggttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactataaaatataat |
12959031 |
T |
|
| Q |
132 |
ggtaataatggatttcttcttgatttgaatttcaggt |
168 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |
|
|
| T |
12959032 |
ggtaataatg---accttcttgattttaatttcaggt |
12959065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 12908012 - 12908153
Alignment:
| Q |
3 |
gctggtgagataaactgatatt--tttatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttg |
100 |
Q |
| |
|
||||||||||| |||||||||| | ||| | |||| |||||||||||| |||||| ||| ||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
12908012 |
gctggtgagatgaactgatattcctatatctttattagaatcataactacgtcattaattgcttatggaattagagttttatttttatcatcttattttg |
12908111 |
T |
|
| Q |
101 |
cattt-aaaattcctaaactacaaaatacaatggtaataatg |
141 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12908112 |
tatttcaaaattcccaaactacaaaatataatggtaataatg |
12908153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 12933101 - 12933242
Alignment:
| Q |
3 |
gctggtgagataaactgatatt--tttatgtgtattcgaatcataactaaatcattatttggttatggaattatcatttgatttttatcatcatattttg |
100 |
Q |
| |
|
||||||||||| |||||||||| | ||| | |||| |||||||||||| |||||| ||| ||| ||||||| ||| |||||||||||| ||||||| |
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|
| T |
12933101 |
gctggtgagatgaactgatattcctatatctttattagaatcataactacgtcattaattgcttaaggaattagagttttatttttatcatcttattttg |
12933200 |
T |
|
| Q |
101 |
cattt-aaaattcctaaactacaaaatacaatggtaataatg |
141 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12933201 |
tatttcaaaattcccaaactacaaaatataatggtaataatg |
12933242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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