View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_14 (Length: 348)
Name: NF20012_low_14
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 4218369 - 4218067
Alignment:
| Q |
22 |
ggagaagaaggaggctgagaagtagtacaatacttattgtattcatcacaatagagatgaaagaagtaacacatctgaccccaaaaggaacaaccaaaaa |
121 |
Q |
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| T |
4218369 |
ggagaagaaggaggctgagaagtagcacaatacttattgtattcatcacaatagagatgaaagaagtaacacatctgaccccaaaaggaacaaccaaaaa |
4218270 |
T |
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| Q |
122 |
acttttgagatttgtaaatacgatcatctttaggttcattacctcttccagtaccctcagcactatagccattcaaaattgcaacaacaaggagaactaa |
221 |
Q |
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| T |
4218269 |
acttttgagatttgtaaatacgatcatctttaggttcattacctcttccagtaccctcagcactatagccattcaaaattgcaacaacaaggagaactaa |
4218170 |
T |
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| Q |
222 |
aacaattgaagcaatgatttttgccatagtgattgatattgttttgcatggaataaaattgactcaatactcaatagtactccaatttatagaattgttg |
321 |
Q |
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| T |
4218169 |
aacaattgaagcaatggtttttgccatagtgattgatattgttttgcatggaataaaattgactc-------aatagtactccaatttatagaattgttg |
4218077 |
T |
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| Q |
322 |
atttctctaa |
331 |
Q |
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|||||||||| |
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| T |
4218076 |
atttctctaa |
4218067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 4215673 - 4215595
Alignment:
| Q |
174 |
accctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatgatttttgccatagtg |
252 |
Q |
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| T |
4215673 |
accctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtg |
4215595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 34357188 - 34357098
Alignment:
| Q |
164 |
ctcttccagtaccctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatgatttttgccatagtgat |
254 |
Q |
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| T |
34357188 |
ctcttcctgcaccctcagcaccatagccattcagcattgcaacaactaggaaaactagaacaagtgaagcaatggtttttgccatagtgat |
34357098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 5398638 - 5398545
Alignment:
| Q |
159 |
attacctcttccagtaccctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatgatttttgccatagtg |
252 |
Q |
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| T |
5398638 |
attacctcttcctgcaccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtg |
5398545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 11952490 - 11952565
Alignment:
| Q |
174 |
accctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatgatttttgccata |
249 |
Q |
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| T |
11952490 |
accctcagcactatagacattaataattgctacaacaaagagaattagaacaagtgaaccaataagttttgccata |
11952565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 41804470 - 41804333
Alignment:
| Q |
120 |
aaacttttgagatttgtaaatacgatcatct---ttaggttcattacctcttccagtaccctcagcactatagccattc---aaaattgcaacaacaagg |
213 |
Q |
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| T |
41804470 |
aaacttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattcagaaatattgccacaacaagg |
41804371 |
T |
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| Q |
214 |
agaactaaaacaattgaagcaatgatttttgccatagt |
251 |
Q |
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||||| ||||| |||| ||||| |||| ||||||| |
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| T |
41804370 |
gaaactagaacaactgaaacaatggcttttcccatagt |
41804333 |
T |
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