View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_15 (Length: 343)
Name: NF20012_low_15
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 27805149 - 27805473
Alignment:
| Q |
1 |
gggaagactctgctaaattacaacgtaagacagacgttgaggtaagtagaacagaatctgccgagtggtggtgtctgccaataatgttacataatt-aaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27805149 |
gggaagactctgctaaattacaacgtaagacagacgttgaggtaagtagaacagaatctgccgagtggtggtgtctgccaataatgttacataattaaaa |
27805248 |
T |
|
| Q |
100 |
acaagaaaagatattctcattaatgtgaggaaggaaggttattcttgaatcctgaataatgaccnnnnnnnnaaatgttatccaccatatagaatataga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27805249 |
acaagaaaagatattctcattaatgtgaggaaggaaggttattcttgaatcctgaataatgacgttttttttaaatgttatccaccatatagaatataga |
27805348 |
T |
|
| Q |
200 |
catagcagaaaaagcataacaagttcaggaagacacatgtggaggacaggacagcccaagaggtaggtaagggggtctcagaagttaggacttaggacaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27805349 |
catagcagaaaaagcataacaagttcaggaagacacatgtggaggacaggacagcccaagaggtaggtaagggggtctcagaagttaggacttaggacaa |
27805448 |
T |
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| Q |
300 |
cctcccactcccacgaatacctaag |
324 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
27805449 |
cctcccactcccacgaatacctaag |
27805473 |
T |
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