View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_18 (Length: 250)
Name: NF20012_low_18
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_18 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 4120345 - 4120581
Alignment:
| Q |
14 |
aatataatgttcaatgagataggattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaaccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4120345 |
aatataatgttcaatgagataggattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaaccc |
4120444 |
T |
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| Q |
114 |
aaagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagatac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4120445 |
aaagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctctatgaagatac |
4120544 |
T |
|
| Q |
214 |
attatacctcgagctattccttcaactatgttcgacc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4120545 |
attatacctcgagctattccttcaactatgttcgacc |
4120581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 4130441 - 4130665
Alignment:
| Q |
26 |
aatgagataggattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaacccaaagtctgatat |
125 |
Q |
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||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4130441 |
aatgatataggaatacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatat |
4130540 |
T |
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| Q |
126 |
ctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagatacattatacctcga |
225 |
Q |
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||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |
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| T |
4130541 |
ttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctgtgtataatcttaagtctcgagtctctatgaagatacattattcctcga |
4130640 |
T |
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| Q |
226 |
gctattccttcaactatgttcgacc |
250 |
Q |
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||||||||||||||||||||||||| |
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| T |
4130641 |
gctattccttcaactatgttcgacc |
4130665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 4142785 - 4143017
Alignment:
| Q |
18 |
taatgttcaatgagataggattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaacccaaag |
117 |
Q |
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|||||| | |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4142785 |
taatgtccgatgagatatgattacttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaag |
4142884 |
T |
|
| Q |
118 |
tctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagatacatta |
217 |
Q |
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|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
4142885 |
tctgatatttttggaatcatgtcgccatcaagtaagacgttgctggcttttaaatctctatgtataatccttagtcttgagtctctatgaagatacatta |
4142984 |
T |
|
| Q |
218 |
tacctcgagctattccttcaactatgttcgacc |
250 |
Q |
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||||||||||||| ||||| | |||||| |||| |
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| T |
4142985 |
tacctcgagctatcccttctattatgtttgacc |
4143017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 4150805 - 4151024
Alignment:
| Q |
26 |
aatgagataggattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaacccaaagtctgatat |
125 |
Q |
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|||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
4150805 |
aatgagatagtactacttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattcttgctaaaccgaagtctgatat |
4150904 |
T |
|
| Q |
126 |
ctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagatacattatacctcga |
225 |
Q |
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|||||||||||||| | ||||||||||| ||||||||||||| |||||||||||| ||| | ||||| |||||| ||||||||||||||||||||||| |
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| T |
4150905 |
ttttggaatcatgtcactatcaagtaagatgttgcttgcttttagatctctatgtatgatccttagtctcgagtctctatgaagatacattatacctcga |
4151004 |
T |
|
| Q |
226 |
gctattccttcaactatgtt |
245 |
Q |
| |
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||||||||||||| |||||| |
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| T |
4151005 |
gctattccttcaattatgtt |
4151024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 4159811 - 4160041
Alignment:
| Q |
16 |
tataatgttcaatgagatag-gattacttactaagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaaccca |
114 |
Q |
| |
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||||||||| ||||||||| || | ||||||||||||| |||||||| || ||||| | ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
4159811 |
tataatgttaaatgagataaagactgcttactaagttccaacaaccctatttgtgtttgtttcatcatcttctcctcctttaacaattctagctaaacca |
4159910 |
T |
|
| Q |
115 |
aagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagataca |
214 |
Q |
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||||||||||| ||||||| ||| || ||||||||||||| ||||||||||||||||| | |||||||||| | || || |||||| |||||||||| | |
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| T |
4159911 |
aagtctgatatttttggaaccatctccccatcaagtaagatgttgcttgcttttaaatcccgatgtataatccttagcctcgagtctctatgaagataaa |
4160010 |
T |
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| Q |
215 |
ttatacctcgagctattccttcaactatgtt |
245 |
Q |
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||||||||||||||| ||||||| |||||| |
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| T |
4160011 |
gtatacctcgagctatgccttcaattatgtt |
4160041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 36366510 - 36366411
Alignment:
| Q |
115 |
aagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagataca |
214 |
Q |
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|||||||||||||||||| |||| ||||||||||||| | |||||||| || | ||||||||| || ||| ||| ||| || |||| |||||||||| |
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| T |
36366510 |
aagtctgatatctttggattcatctctccatcaagtagaatgttgcttgccttaagatctctatggatgatcctaaatctagaatcttggtgaagataca |
36366411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 486960 - 487060
Alignment:
| Q |
112 |
ccaaagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctctatgtataatcttaagtcttgagtctttatgaagat |
211 |
Q |
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||||||||||| |||||||| ||||||| || | ||| ||||| |||||||||| |||||||||||| || | |||||| || |||| |||||||| |
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| T |
486960 |
ccaaagtctgaaatctttgggttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagat |
487059 |
T |
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| Q |
212 |
a |
212 |
Q |
| |
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| |
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| T |
487060 |
a |
487060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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