View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_2 (Length: 532)
Name: NF20012_low_2
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 2875789 - 2876291
Alignment:
| Q |
18 |
aatatctagagaataattatttgattnnnnnnnn-tcggtttcatgagataaagaaagaaataaacctaagtcctaataaagaatacgccgataggatga |
116 |
Q |
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| T |
2875789 |
aatatctagagaataattatttgattaaaaaaaaatcgatttcatgagataaagaaagaaataaacctaagtcctaataaagaacacgccgataggatga |
2875888 |
T |
|
| Q |
117 |
actaataaggttgaggaaagacatggagacggctcatgaaccatgatcaaggtatctgtaaaattaactccaaattttgctagaatacaagtattaccca |
216 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2875889 |
actactaaggttgaggaaagacatggaggcggctcatgaaccatgatcaaggtatccgtaaaattagctccaaattttgctagaatacaagtattaccca |
2875988 |
T |
|
| Q |
217 |
cccaaaagcgttgttgagggtaaaattataatcattctttatgaaatctctaatagtctccaacatatattggtgtaatgatgaaattgatgtatgtcca |
316 |
Q |
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| T |
2875989 |
cccaaaagcgtggttgagggtaaaattataatcattctttatgaaatctctaatagtctccaacatatattagtgtaatgatgaaatcgatgtatatcca |
2876088 |
T |
|
| Q |
317 |
tagttgctaagtgcaccatatgaagcgaatcaaaatagcaacgacgctgtgaaatccaacttgccaacacaaccattgatttaatgttgtttcatattta |
416 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2876089 |
tagttgctaagtgcaccacatgaagcggatcaaaatagcaacgacgctctgaaatccaacttaccaacacaaccattgatttaatgttgtttcatattta |
2876188 |
T |
|
| Q |
417 |
tttgatgttattttcaatcattaatttcaccaaacactttgataactttataagctaatttttactgaactagaaatatgttgatattatgctatagtta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2876189 |
tttgatgttattttcaatcattaatttcaccaaacactttgataactttataagctaatttttactgaactagaaatatgttgatattatgctatagtta |
2876288 |
T |
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| Q |
517 |
tat |
519 |
Q |
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| T |
2876289 |
tat |
2876291 |
T |
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