View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20012_low_21 (Length: 238)

Name: NF20012_low_21
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20012_low_21
NF20012_low_21
[»] chr8 (13 HSPs)
chr8 (18-238)||(4120897-4121117)
chr8 (18-238)||(4160269-4160490)
chr8 (97-238)||(4151607-4151748)
chr8 (97-238)||(4131160-4131301)
chr8 (102-231)||(4143742-4143871)
chr8 (137-183)||(19171170-19171216)
chr8 (137-183)||(19288996-19289042)
chr8 (137-183)||(19338809-19338855)
chr8 (137-183)||(19356836-19356882)
chr8 (137-183)||(19453836-19453882)
chr8 (137-183)||(19527193-19527239)
chr8 (137-183)||(19552158-19552204)
chr8 (137-183)||(19580484-19580530)
[»] chr2 (3 HSPs)
chr2 (149-238)||(2745931-2746020)
chr2 (130-238)||(2713022-2713130)
chr2 (140-238)||(2724101-2724199)
[»] chr7 (9 HSPs)
chr7 (129-238)||(20263492-20263601)
chr7 (129-238)||(20273307-20273416)
chr7 (131-238)||(19938527-19938634)
chr7 (131-238)||(19969666-19969773)
chr7 (168-238)||(20005825-20005895)
chr7 (166-231)||(20243039-20243104)
chr7 (129-238)||(20279018-20279127)
chr7 (129-238)||(20283595-20283704)
chr7 (129-238)||(20294117-20294226)
[»] chr4 (1 HSPs)
chr4 (168-238)||(40824311-40824381)
[»] chr1 (1 HSPs)
chr1 (137-183)||(36311922-36311968)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4121117 - 4120897
Alignment:
Q  18 tttggccctgtatacaaggtgattttgtttgaggttttatatgccannnnnnnctaatagatatcatatctataatatcaaatatttttcacactatcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4121117 tttggccctgtatacaaggtgattttgtttgaggttttatatgccatttttttctaatagatatcatatctataatatcaaatatttttcacactatcta 4121018  T
Q  118 gggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121017 gggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttct 4120918  T
Q  218 aaacttcaacatcgtaatctt 238  Q
    |||||||||||||||||||||    
T  4120917 aaacttcaacatcgtaatctt 4120897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4160490 - 4160269
Alignment:
Q  18 tttggccctgtatacaaggtgattttgtttgaggttttatatgccannnnnnnctaatagatatcatatctataatatcaa-atatttttcacactatct 116  Q
    |||||||||||||||||||| ||||||| | || |||| |||| ||        ||||| |||||||   | |||||| || |||| ||||||| |||||    
T  4160490 tttggccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttcacaatatct 4160391  T
Q  117 agggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttc 216  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  4160390 agggaatactggaagatggccaagaagttgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagtagcagtgatttc 4160291  T
Q  217 taaacttcaacatcgtaatctt 238  Q
    ||||||||||||||| ||||||    
T  4160290 taaacttcaacatcgcaatctt 4160269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 4151748 - 4151607
Alignment:
Q  97 aaatatttttcacactatctagggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatg 196  Q
    ||||| |||| |||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4151748 aaatactttttacactatctagggagtcatggaagatggtcaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatg 4151649  T
Q  197 aacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    || ||||| |||||||||||||||||||||||||| ||||||    
T  4151648 aatgaagttgtagtgatttctaaacttcaacatcgcaatctt 4151607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 4131301 - 4131160
Alignment:
Q  97 aaatatttttcacactatctagggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatg 196  Q
    |||||||||| | ||||| |||||| |   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4131301 aaatattttttatactatatagggagtcacggaagatggtcaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatg 4131202  T
Q  197 aacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    || ||||| |||||||||||||||||||||||||| ||||||    
T  4131201 aatgaagttgtagtgatttctaaacttcaacatcgcaatctt 4131160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 4143871 - 4143742
Alignment:
Q  102 tttttcacactatctagggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacga 201  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||| |||||||||||||| ||  |||| |||||||||||||||||||| ||||||||    
T  4143871 tttttgacactatccagggaataatgcaagatggccaagaaattgccgtgaaaagactctcgaagtcatcaggacaaggaatagaagaattcatgaacga 4143772  T
Q  202 agtagtagtgatttctaaacttcaacatcg 231  Q
    ||||||||||||||||||||||||||||||    
T  4143771 agtagtagtgatttctaaacttcaacatcg 4143742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 19171216 - 19171170
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||||||||||| |||||||| |||||  ||||||||||||||||    
T  19171216 caagaaattgctgtaaaaagactttcaaagacatctggacaaggaat 19171170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19288996 - 19289042
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||||||||||| |||||||| |||||| ||||| ||||||||||    
T  19288996 caagaaattgctgtaaaaagactttcaaaaacatctcgacaaggaat 19289042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19338809 - 19338855
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19338809 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19338855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19356836 - 19356882
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19356836 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19356882  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19453836 - 19453882
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19453836 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19453882  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 19527239 - 19527193
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19527239 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19527193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 19552204 - 19552158
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19552204 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19552158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19580484 - 19580530
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19580484 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19580530  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 2746020 - 2745931
Alignment:
Q  149 gtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    ||||||||||| ||||| ||||| ||||| ||  |||||||||||||||| |||||  | |||||||| || ||||||||||| ||||||    
T  2746020 gtgaaaagactttcaaaggcatcaggacaggggttagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatctt 2745931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 2713130 - 2713022
Alignment:
Q  130 agatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacat 229  Q
    |||||| |||||||| || ||||||||||| ||| |||  ||   ||||||  ||||||||||||||||||||||  | |||||||| || |||||||||    
T  2713130 agatggacaagaaatagccgtgaaaagactttcagaaggttcaacacaagggttagaagaatttatgaacgaagtgattgtgatttcaaagcttcaacat 2713031  T
Q  230 cgtaatctt 238  Q
    || ||||||    
T  2713030 cgcaatctt 2713022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 2724199 - 2724101
Alignment:
Q  140 gaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    ||||| || ||||||||||| ||||| || || ||||| ||  |||||||||||||||| |||||  | |||||||| || ||||||||||| ||||||    
T  2724199 gaaatagcagtgaaaagactttcaaaggcttcaggacaggggctagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatctt 2724101  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 20263492 - 20263601
Alignment:
Q  129 aagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaaca 228  Q
    ||||||| | |||||| || || ||||| || || | |||||||||||||||  | || ||||| ||||||||| |||| ||||||| ||| ||||||||    
T  20263492 aagatggtcgagaaatagcagttaaaaggctttctagagcatctggacaagggttggatgaattcatgaacgaaatagtggtgatttgtaagcttcaaca 20263591  T
Q  229 tcgtaatctt 238  Q
     |||||||||    
T  20263592 ccgtaatctt 20263601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 20273307 - 20273416
Alignment:
Q  129 aagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaaca 228  Q
    ||||||| | |||||| || || |||||||| || |||||||||||||||||  | || ||||| ||||| |||||||| ||  ||| ||| ||||||||    
T  20273307 aagatggtcgagaaatagcagttaaaagactttctaaagcatctggacaagggttggaggaattcatgaatgaagtagtggttctttgtaagcttcaaca 20273406  T
Q  229 tcgtaatctt 238  Q
     |||||||||    
T  20273407 ccgtaatctt 20273416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 19938527 - 19938634
Alignment:
Q  131 gatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatc 230  Q
    ||||| || ||||| || || |||||||| || |||||||||||||||||  || ||||||| ||||| ||||| |  || |||||||| |||||||| |    
T  19938527 gatggtcaggaaatagcagttaaaagactttctaaagcatctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacacc 19938626  T
Q  231 gtaatctt 238  Q
    | ||||||    
T  19938627 gcaatctt 19938634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 19969666 - 19969773
Alignment:
Q  131 gatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatc 230  Q
    ||||| || ||||| || || |||||||| || |||||||||||||||||  || ||||||| ||||| ||||| |  || |||||||| |||||||| |    
T  19969666 gatggtcaggaaatagcagttaaaagactttctaaagcatctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacacc 19969765  T
Q  231 gtaatctt 238  Q
    | ||||||    
T  19969766 gcaatctt 19969773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 20005895 - 20005825
Alignment:
Q  168 catctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    |||| ||||||||  |||||||||| ||||| ||||| |||||||||||||| ||||| || || ||||||    
T  20005895 catccggacaagggttagaagaattcatgaatgaagtcgtagtgatttctaagcttcagcaccgcaatctt 20005825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 20243039 - 20243104
Alignment:
Q  166 agcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcg 231  Q
    |||||||||||||||  | || ||||| |||||||||||| | ||||||| ||| |||||||||||    
T  20243039 agcatctggacaagggttggaggaattcatgaacgaagtattggtgatttgtaagcttcaacatcg 20243104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 20279018 - 20279127
Alignment:
Q  129 aagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaaca 228  Q
    |||||||||| ||||| || || |||||||| || | |||||| ||||||||  | || ||||||||||| |||||||| ||  ||| ||| ||||||||    
T  20279018 aagatggccaggaaatagcagttaaaagactttctagagcatccggacaagggttggaggaatttatgaatgaagtagtggtcctttgtaagcttcaaca 20279117  T
Q  229 tcgtaatctt 238  Q
     || ||||||    
T  20279118 ccgcaatctt 20279127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 20283595 - 20283704
Alignment:
Q  129 aagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaaca 228  Q
    ||||||| || ||||| || || |||||||| |||| |||||||||||||||  | || ||||| ||||| |||||| | ||||||  ||| ||||||||    
T  20283595 aagatggtcaggaaatagcagttaaaagactttcaagagcatctggacaaggtctggaggaattcatgaatgaagtaatggtgattagtaagcttcaaca 20283694  T
Q  229 tcgtaatctt 238  Q
     || ||||||    
T  20283695 ccgcaatctt 20283704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 20294117 - 20294226
Alignment:
Q  129 aagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaaca 228  Q
    ||||||| || ||||| || || |||||||| || | |||||||||||||||  | || ||||| ||||| |||||||| ||  ||| ||| ||||||||    
T  20294117 aagatggtcaggaaatagcagttaaaagactttctagagcatctggacaagggttggaggaattcatgaatgaagtagtggttctttgtaagcttcaaca 20294216  T
Q  229 tcgtaatctt 238  Q
     |||||||||    
T  20294217 ccgtaatctt 20294226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 40824381 - 40824311
Alignment:
Q  168 catctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatctt 238  Q
    |||| ||||| ||| |||||||||| | ||| |||||||| ||||||| ||| ||||||||||| ||||||    
T  40824381 catccggacagggactagaagaattcaagaatgaagtagttgtgatttgtaagcttcaacatcgcaatctt 40824311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 36311968 - 36311922
Alignment:
Q  137 caagaaattgctgtgaaaagactctcaaaagcatctggacaaggaat 183  Q
    |||||| ||||| |||||||||| |||||| ||||||||||||||||    
T  36311968 caagaagttgctatgaaaagactttcaaaaacatctggacaaggaat 36311922  T

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