View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20012_low_4 (Length: 458)

Name: NF20012_low_4
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20012_low_4
NF20012_low_4
[»] chr1 (21 HSPs)
chr1 (94-439)||(23027848-23028194)
chr1 (10-87)||(23027713-23027790)
chr1 (316-365)||(36699875-36699924)
chr1 (316-365)||(36715979-36716028)
chr1 (316-366)||(51162052-51162102)
chr1 (316-365)||(43413590-43413639)
chr1 (155-270)||(13113124-13113239)
chr1 (181-270)||(4534486-4534575)
chr1 (316-365)||(29153046-29153095)
chr1 (316-365)||(47792771-47792820)
chr1 (210-270)||(14794713-14794773)
chr1 (174-260)||(14206761-14206847)
chr1 (181-267)||(32730084-32730170)
chr1 (324-365)||(25892150-25892191)
chr1 (181-246)||(33569144-33569209)
chr1 (329-365)||(12880555-12880591)
chr1 (181-241)||(16587042-16587102)
chr1 (174-270)||(45814493-45814589)
chr1 (316-365)||(33015066-33015115)
chr1 (325-365)||(25900779-25900819)
chr1 (228-260)||(48434412-48434444)
[»] chr7 (23 HSPs)
chr7 (94-318)||(48778232-48778456)
chr7 (10-87)||(48778097-48778174)
chr7 (316-365)||(28606349-28606398)
chr7 (316-364)||(9157547-9157595)
chr7 (176-250)||(25987669-25987743)
chr7 (319-365)||(28337070-28337116)
chr7 (316-366)||(45234369-45234419)
chr7 (181-270)||(6800215-6800304)
chr7 (320-365)||(37597534-37597579)
chr7 (174-270)||(27000137-27000233)
chr7 (317-365)||(48268925-48268973)
chr7 (163-238)||(7635003-7635078)
chr7 (316-357)||(25950643-25950684)
chr7 (174-270)||(47801260-47801356)
chr7 (325-366)||(5277992-5278033)
chr7 (316-365)||(28606518-28606567)
chr7 (316-365)||(43094497-43094546)
chr7 (325-365)||(13954576-13954616)
chr7 (181-264)||(13063656-13063739)
chr7 (181-264)||(44362729-44362812)
chr7 (316-366)||(17221828-17221878)
chr7 (211-253)||(40858832-40858874)
chr7 (317-365)||(8320166-8320214)
[»] chr8 (24 HSPs)
chr8 (94-318)||(16974906-16975130)
chr8 (10-87)||(16974771-16974848)
chr8 (176-270)||(3773654-3773748)
chr8 (316-365)||(25631960-25632009)
chr8 (316-365)||(41636650-41636699)
chr8 (181-270)||(42452476-42452565)
chr8 (329-364)||(4077637-4077672)
chr8 (319-366)||(10871961-10872008)
chr8 (316-362)||(5967628-5967674)
chr8 (212-270)||(15863844-15863902)
chr8 (316-365)||(17934514-17934563)
chr8 (316-365)||(41845106-41845155)
chr8 (325-365)||(12178075-12178115)
chr8 (325-365)||(12422503-12422543)
chr8 (316-366)||(6524983-6525034)
chr8 (172-270)||(13448790-13448888)
chr8 (181-264)||(20129259-20129342)
chr8 (316-366)||(32821862-32821912)
chr8 (156-246)||(35780708-35780798)
chr8 (226-260)||(41691606-41691640)
chr8 (161-250)||(25320006-25320095)
chr8 (316-357)||(31801056-31801097)
chr8 (186-238)||(23447588-23447640)
chr8 (326-366)||(45237983-45238023)
[»] chr2 (26 HSPs)
chr2 (94-318)||(355676-355900)
chr2 (10-87)||(355958-356035)
chr2 (316-366)||(33891889-33891939)
chr2 (316-366)||(41670333-41670383)
chr2 (316-357)||(6201206-6201247)
chr2 (316-365)||(14660269-14660318)
chr2 (320-365)||(16751100-16751145)
chr2 (176-289)||(20213773-20213885)
chr2 (316-365)||(41398938-41398987)
chr2 (316-364)||(32493790-32493838)
chr2 (316-365)||(5998109-5998158)
chr2 (194-270)||(2467920-2467996)
chr2 (162-270)||(12564744-12564852)
chr2 (318-365)||(21646865-21646912)
chr2 (320-366)||(3330911-3330957)
chr2 (181-247)||(32487950-32488016)
chr2 (181-259)||(40368954-40369032)
chr2 (316-366)||(42460834-42460884)
chr2 (315-365)||(42887695-42887745)
chr2 (320-365)||(21200301-21200346)
chr2 (181-270)||(40366495-40366584)
chr2 (181-266)||(44602662-44602747)
chr2 (319-365)||(21202355-21202401)
chr2 (316-354)||(32918437-32918475)
chr2 (181-238)||(24220649-24220706)
chr2 (316-365)||(39952376-39952425)
[»] chr5 (26 HSPs)
chr5 (94-310)||(10460297-10460513)
chr5 (10-87)||(10460162-10460239)
chr5 (316-365)||(5841576-5841625)
chr5 (319-365)||(36977666-36977712)
chr5 (316-365)||(26244269-26244318)
chr5 (316-365)||(2068560-2068609)
chr5 (316-365)||(6812819-6812868)
chr5 (316-365)||(31576379-31576428)
chr5 (316-365)||(35286297-35286346)
chr5 (316-355)||(865851-865890)
chr5 (322-365)||(9771626-9771669)
chr5 (212-259)||(41777443-41777490)
chr5 (316-365)||(394168-394217)
chr5 (316-357)||(17218320-17218361)
chr5 (316-365)||(25824393-25824442)
chr5 (181-238)||(35076888-35076945)
chr5 (316-365)||(42522372-42522421)
chr5 (181-261)||(21824454-21824534)
chr5 (234-286)||(42333570-42333622)
chr5 (179-266)||(43464748-43464835)
chr5 (211-253)||(26369745-26369787)
chr5 (328-365)||(11961679-11961716)
chr5 (316-357)||(15834651-15834692)
chr5 (181-270)||(29812880-29812969)
chr5 (318-366)||(8057315-8057363)
chr5 (316-344)||(32270234-32270262)
[»] chr3 (28 HSPs)
chr3 (173-288)||(33335540-33335655)
chr3 (155-250)||(1233355-1233450)
chr3 (183-266)||(42830577-42830660)
chr3 (316-366)||(46552564-46552614)
chr3 (316-365)||(21224268-21224317)
chr3 (172-286)||(30953597-30953711)
chr3 (172-286)||(30969409-30969523)
chr3 (316-365)||(36734877-36734926)
chr3 (181-267)||(35273317-35273403)
chr3 (316-366)||(35924681-35924731)
chr3 (183-286)||(299320-299423)
chr3 (323-365)||(12113541-12113583)
chr3 (316-365)||(17578644-17578693)
chr3 (181-274)||(28946746-28946839)
chr3 (181-250)||(36731124-36731193)
chr3 (316-365)||(39993391-39993440)
chr3 (161-238)||(47772513-47772590)
chr3 (323-363)||(41118627-41118667)
chr3 (210-261)||(21736866-21736917)
chr3 (211-253)||(10437241-10437283)
chr3 (161-202)||(16176325-16176366)
chr3 (316-365)||(30434165-30434214)
chr3 (316-365)||(30738556-30738605)
chr3 (316-365)||(45406282-45406331)
chr3 (181-241)||(12950332-12950392)
chr3 (323-363)||(21891945-21891985)
chr3 (329-365)||(24475413-24475449)
chr3 (213-261)||(41225917-41225965)
[»] chr4 (23 HSPs)
chr4 (146-259)||(49194178-49194291)
chr4 (181-270)||(12377463-12377552)
chr4 (316-366)||(24234543-24234593)
chr4 (316-366)||(47606895-47606945)
chr4 (320-365)||(24968529-24968574)
chr4 (316-365)||(35321346-35321395)
chr4 (316-365)||(50680073-50680122)
chr4 (165-247)||(17535467-17535549)
chr4 (172-270)||(25057333-25057431)
chr4 (316-365)||(37874785-37874834)
chr4 (175-268)||(50609439-50609532)
chr4 (181-262)||(54846168-54846249)
chr4 (181-262)||(46218687-46218768)
chr4 (212-259)||(42397514-42397561)
chr4 (320-366)||(180791-180837)
chr4 (316-366)||(16304289-16304339)
chr4 (211-253)||(47591265-47591307)
chr4 (316-357)||(25142065-25142106)
chr4 (213-318)||(40851366-40851471)
chr4 (228-260)||(7447023-7447055)
chr4 (181-253)||(12832922-12832994)
chr4 (176-260)||(14454686-14454770)
chr4 (212-260)||(39867545-39867593)
[»] chr6 (21 HSPs)
chr6 (172-311)||(8770750-8770889)
chr6 (155-250)||(17798655-17798750)
chr6 (172-270)||(1727739-1727837)
chr6 (173-261)||(13413272-13413360)
chr6 (316-365)||(21381655-21381704)
chr6 (318-365)||(21955407-21955454)
chr6 (181-241)||(28590869-28590929)
chr6 (212-259)||(8234575-8234622)
chr6 (316-365)||(13246908-13246957)
chr6 (176-261)||(18488945-18489030)
chr6 (316-361)||(29047601-29047645)
chr6 (317-353)||(12650321-12650357)
chr6 (181-261)||(16478376-16478456)
chr6 (167-238)||(2013458-2013529)
chr6 (316-347)||(13193072-13193103)
chr6 (181-247)||(14392846-14392912)
chr6 (316-366)||(30792735-30792785)
chr6 (33-78)||(31293124-31293169)
chr6 (179-259)||(2854890-2854970)
chr6 (325-365)||(7793038-7793078)
chr6 (228-260)||(33754017-33754049)
[»] scaffold0123 (1 HSPs)
scaffold0123 (173-270)||(46155-46255)
[»] scaffold0024 (1 HSPs)
scaffold0024 (316-365)||(41997-42046)
[»] scaffold0027 (1 HSPs)
scaffold0027 (316-366)||(116912-116962)
[»] scaffold0011 (1 HSPs)
scaffold0011 (159-219)||(217714-217774)
[»] scaffold0006 (1 HSPs)
scaffold0006 (316-365)||(160751-160799)
[»] scaffold0116 (2 HSPs)
scaffold0116 (179-259)||(42968-43048)
scaffold0116 (179-259)||(46888-46968)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 94 - 439
Target Start/End: Original strand, 23027848 - 23028194
Alignment:
Q  94 cattattagttacaaaacgatacgcctcccgtacattgtaaccatgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23027848 cattattagttacaaaacgatacgcctcccgtacattgtaaccctgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 23027947  T
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 293  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23027948 attatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 23028047  T
Q  294 ctctccatctccgccaccttacacttatatcaaatgagtttgaaataacttttactatttttgaataaattt-tnnnnnnnnnnctattttttaaaaata 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||    
T  23028048 ctctccatctccgccaccttacacttatatcaaatgagtttgaaataacttttactatttttgagtaaatttaaaaaaaaaaaactattttttaaaaata 23028147  T
Q  393 caaaggaaaattcacattatcatttttaataatttcgatcacatact 439  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23028148 caaaggaaaattcacatgatcatttttaataatttcgatcacatact 23028194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 23027713 - 23027790
Alignment:
Q  10 gaagaatattgcatcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaatgaaacct 87  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23027713 gaagaatattgcgtcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaacgaaacct 23027790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 36699924 - 36699875
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36699924 acttatatcaaatgagtttgaaataacttttactatttttgagtaaattt 36699875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 36716028 - 36715979
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36716028 acttatatcaaatgagtttgaaataacttttactatttttgagtaaattt 36715979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 51162052 - 51162102
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  51162052 acttatatcaaatgaatttgaaataacttttactatttttgagtaaatttt 51162102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 43413590 - 43413639
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  43413590 acttatatcaaatgagtttgaaataccttttactatttttgagtaaattt 43413639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 13113239 - 13113124
Alignment:
Q  155 ccaacaccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgt 254  Q
    ||||| ||||||||| |||  ||||||||  ||||||| || ||| |||||||  |||||||||| ||||| ||||||||||||||| |||||| | | |    
T  13113239 ccaactccatttatcaatagtattaacctataaaacaaagtgatgcaataatagtgaacactccctcacactctcctcctcccaagccaacaaatgcctt 13113140  T
Q  255 ctccacaaccacgccc 270  Q
    | ||||| ||||||||    
T  13113139 cgccacacccacgccc 13113124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 4534575 - 4534486
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    ||||||||||||| |||  |||||| || || |||||||| |||| ||||||||||||||| ||||| || |||||||||| ||| ||||    
T  4534575 cctgcaaaacaacattagataataacatagagcactcccgaacactctcctcctcccaagctaacaatcggcgtctccacacccaagccc 4534486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 29153046 - 29153095
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  29153046 acttataccaaatgagtttgaaataacttctactatttttgagtaaattt 29153095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 47792771 - 47792820
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  47792771 acttatatcaaatgagtgtgaaataaattttactatttttgagtaaattt 47792820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 14794713 - 14794773
Alignment:
Q  210 gaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||||| ||||| ||| ||||||||||| ||||||||||||||||||  ||||||||    
T  14794713 gaacactccctcacactctcttcctcccaagctaacaaacgacgtctccactcccacgccc 14794773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 14206847 - 14206761
Alignment:
Q  174 acattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccac 260  Q
    |||||| |||||||||||| |||| ||||||| |  ||||| |||| |||| |||||| |||||| |||||||||||  ||||||||    
T  14206847 acattatcctgcaaaacaatgttacgtaataacagagaacattccctcacagactcctactcccacgcaaacaaacggagtctccac 14206761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 32730170 - 32730084
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacg 267  Q
    ||||||||||||||||||| |||||   |||||| |||| ||||| |||||||||||| || |||| |||| | ||||||| |||||    
T  32730170 cctgcaaaacaacgttatgcaataaagcggaacagtccctcacactctcctcctcccacgctaacagacgatgcctccacacccacg 32730084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 25892150 - 25892191
Alignment:
Q  324 caaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  25892150 caaatgagtttgaaataacttctactatttttgagtaaattt 25892191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 33569144 - 33569209
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaaca 246  Q
    ||||||||| || |||||||| ||| | |||||| |||| |||||||||||||||||| |||||||    
T  33569144 cctgcaaaataatgttatgtagtaacaaggaacagtccctcacacactcctcctcccaggcaaaca 33569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 12880555 - 12880591
Alignment:
Q  329 gagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12880555 gagtttgaaataacttttactatttttgagtaaattt 12880591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 16587102 - 16587042
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagc 241  Q
    ||||||||||||||||||| ||||| |  || ||||||| ||||| |||||||||||||||    
T  16587102 cctgcaaaacaacgttatgaaataacacagagcactccctcacactctcctcctcccaagc 16587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 45814493 - 45814589
Alignment:
Q  174 acattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||| ||||||||||||  |||||  ||||||  || ||||||| |||    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  45814493 acattatcctgcaaaacaaaattatgctataatacagagcactccctcaccatatcctcctcccacgcaaacaaacggcgtctccacacccacgccc 45814589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 33015115 - 33015066
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||| ||||||||||||||| ||||||||| || |||||||    
T  33015115 acttataccaaataagtttgaaataacttgtactattttcgactaaattt 33015066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 25900779 - 25900819
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||| |||||| |||||||||||| |||||||    
T  25900779 aaatgagtttgaactaacttctactatttttgagtaaattt 25900819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 48434412 - 48434444
Alignment:
Q  228 tcctcctcccaagcaaacaaacgacgtctccac 260  Q
    ||||||||||| |||||||||||||||||||||    
T  48434412 tcctcctcccaggcaaacaaacgacgtctccac 48434444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 94 - 318
Target Start/End: Original strand, 48778232 - 48778456
Alignment:
Q  94 cattattagttacaaaacgatacgcctcccgtacattgtaaccatgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 193  Q
    |||||||||| || ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48778232 cattattagtaacgaaacgatacgcctcccgtatagtgtaaccctgtgaaggatcaagtgcccaacaccatttatcgatcacattaacctgcaaaacaac 48778331  T
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48778332 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 48778431  T
Q  294 ctctccatctccgccaccttacact 318  Q
    |||||||||||||||||||||||||    
T  48778432 ctctccatctccgccaccttacact 48778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 48778097 - 48778174
Alignment:
Q  10 gaagaatattgcatcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaatgaaacct 87  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48778097 gaagaatatttcgtcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaacgaaacct 48778174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 28606349 - 28606398
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28606349 acttatatcaaatgagtttgaaataacttttactatttttgaaaaaattt 28606398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 9157595 - 9157547
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatt 364  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9157595 acttatatcaaatgagtttgaaataacttttactatttttgagtaaatt 9157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 25987743 - 25987669
Alignment:
Q  176 attaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 250  Q
    ||||||||| ||||||| ||||||||||||||   ||||||||| ||||| ||||||||||||||| ||||||||    
T  25987743 attaacctgtaaaacaaagttatgtaataatagtaaacactccctcacactctcctcctcccaagctaacaaacg 25987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 28337070 - 28337116
Alignment:
Q  319 tatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28337070 tatatcaaatgagtttgaaataacttttactatttttgagtaaattt 28337116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 45234419 - 45234369
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  45234419 acttatatcgaatgagtttgaaataacttttactatttttgagtaaatttt 45234369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 6800304 - 6800215
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||||||| |||||||||||  |  |||| ||||| |||| | ||||||||||| ||||||||||| |||||||||| ||||||||    
T  6800304 cctgcaaaacaatgttatgtaatagcaaagaacgctccctcacatattcctcctcccacgcaaacaaacggcgtctccacacccacgccc 6800215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 37597534 - 37597579
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  37597534 atatcaaatgagtttgaaataacttttactatttttgagtaaattt 37597579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 27000233 - 27000137
Alignment:
Q  174 acattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    ||||||||||||||||||||||||||||| | ||  |  ||||||| |||||  |||||||||||||  ||||| ||||||||||||| ||| ||||    
T  27000233 acattaacctgcaaaacaacgttatgtaacagtaaagtgcactccctcacactatcctcctcccaagacaacaagcgacgtctccacacccatgccc 27000137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 48268925 - 48268973
Alignment:
Q  317 cttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  48268925 cttatatcaaatgaatttgaaataacttttactatttttgagtaaattt 48268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 7635078 - 7635003
Alignment:
Q  163 atttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||  |||||||| | ||||| ||||||||||||    
T  7635078 atttatcggtagcattaacctgtaaaacaaagttatgtaataataaagaacactctctcacactctcctcctccca 7635003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 25950643 - 25950684
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  25950643 acttatatcaaatgagtttaaaataacttttactatttttga 25950684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 47801260 - 47801356
Alignment:
Q  174 acattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||| |||||||||||| |||||||||||  || || || |||| |||||  |||||||||||||| |||| |||  ||||||||| ||||||||    
T  47801260 acattatcctgcaaaacaatgttatgtaatagaatagagcattccctcacactttcctcctcccaagctaacagacggtgtctccacacccacgccc 47801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 5277992 - 5278033
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  5277992 aaatgagtttgaaataacttctactatttttgagtaaatttt 5278033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 28606567 - 28606518
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  28606567 acttataccaaatgagtttgaaataacttctactacttttgactaaattt 28606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 43094546 - 43094497
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| |||||||||||||||||||||  ||||||||||| |||||||    
T  43094546 acttataacaaatgagtttgaaataacttaaactatttttgagtaaattt 43094497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 13954576 - 13954616
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  13954576 aaatgagtttgaaataacttctactatttttgagtaaattt 13954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 13063739 - 13063656
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaacc 264  Q
    |||||||||||| |||||||||||| |  |||||||||  ||||| |||||||||||| || |  |||||||| | ||||||||    
T  13063739 cctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgccattaaacgacggcgccacaacc 13063656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 44362729 - 44362812
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaacc 264  Q
    |||||||||||| |||||||||||| |  |||||||||  ||||| |||||||||||| || |  |||||||| | ||||||||    
T  44362729 cctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgccattaaacgacgacgccacaacc 44362812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 17221878 - 17221828
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||||||||||||| |   ||||||||||||||||||| ||||||||    
T  17221878 acttatatcaaatgagttcggggtaacttttactatttttgagtaaatttt 17221828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 40858832 - 40858874
Alignment:
Q  211 aacactcccgcacacactcctcctcccaagcaaacaaacgacg 253  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  40858832 aacactcccgcaccttctcctcctcccaagcaaacaaacgacg 40858874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 8320166 - 8320214
Alignment:
Q  317 cttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||| |||||| ||||||||||||||| |||||||||| | |||||||    
T  8320166 cttatttcaaataagtttgaaataacttatactattttttagtaaattt 8320214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 94 - 318
Target Start/End: Original strand, 16974906 - 16975130
Alignment:
Q  94 cattattagttacaaaacgatacgcctcccgtacattgtaaccatgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 193  Q
    |||||||||  ||||| ||||||||||| |||||| |||||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16974906 cattattagcaacaaatcgatacgcctctcgtacagtgtaaccatgagtagtatcaagtgcccaacaccatttatcggtaacattaacctgcaaaacaac 16975005  T
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 293  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975006 gttatgtaataatatggagcactcccgcacacactcctcctcccaagcaaacagacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 16975105  T
Q  294 ctctccatctccgccaccttacact 318  Q
    |||||||||||||||||| ||||||    
T  16975106 ctctccatctccgccaccatacact 16975130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 16974771 - 16974848
Alignment:
Q  10 gaagaatattgcatcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaatgaaacct 87  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  16974771 gaagaatatttcgtcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaactccaaacaaacaacgaaacct 16974848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 3773654 - 3773748
Alignment:
Q  176 attaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||| |||||||| ||||||||||||||  || ||||||| |||||  |||||||||||||| ||||| || |||||||||| ||||||||    
T  3773654 attaacctccaaaacaatgttatgtaataatactgagcactccctcacactttcctcctcccaagctaacaaccggcgtctccacacccacgccc 3773748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 25631960 - 25632009
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  25631960 acttatatcaaatgagtttgaaataacttccactatttttgaataaattt 25632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 41636650 - 41636699
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  41636650 acttatattaaatgagtttcaaataacttttactatttttgaataaattt 41636699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 42452565 - 42452476
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||||||| |||||| ||||  |  |||||||||| |||| | ||||||||||| ||||| | |||||||||||||| ||||||||    
T  42452565 cctgcaaaacaatgttatgaaatagcaaagaacactccctcacagattcctcctcccacgcaaatagacgacgtctccacacccacgccc 42452476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 364
Target Start/End: Complemental strand, 4077672 - 4077637
Alignment:
Q  329 gagtttgaaataacttttactatttttgaataaatt 364  Q
    ||||||||||||||||||||||||||||||||||||    
T  4077672 gagtttgaaataacttttactatttttgaataaatt 4077637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 10871961 - 10872008
Alignment:
Q  319 tatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  10871961 tataacaaatgagtttgaaataactgctactatttttgaataaatttt 10872008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 5967628 - 5967674
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaa 362  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  5967628 acttatatcaaataagtttaaaataacttttactatttttgagtaaa 5967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 15863902 - 15863844
Alignment:
Q  212 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||| ||||| |||||||| | || ||||||||||||||||||||| ||||||||    
T  15863902 acactccctcacactctcctccttcgaaacaaacaaacgacgtctccacacccacgccc 15863844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 17934514 - 17934563
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||||||    
T  17934514 acttatatcaattgagtttgaaataacttttactaatactgaataaattt 17934563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 41845106 - 41845155
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||| ||||||||||||| |||||||||| |||||||||    
T  41845106 acttataacaaatgaatttgaaataacttatactattttttaataaattt 41845155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 12178075 - 12178115
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  12178075 aaatgagtttgaaataacttatactatttttgactaaattt 12178115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 12422503 - 12422543
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  12422503 aaatgagtttgaaataacttatactatttttgactaaattt 12422543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 6524983 - 6525034
Alignment:
Q  316 acttatatcaaatgagtttgaaataac-ttttactatttttgaataaatttt 366  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  6524983 acttatataaaatgagtttgaaataactttttattatttttgaatatatttt 6525034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 13448790 - 13448888
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatat-ggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||| |||||||||||||| |||||| || | ||| ||| ||||||| || || |||||||||||| || |||||||| |||||||||  ||||||||    
T  13448790 taacatcaacctgcaaaacaatgttatgaaaca-tatcggagcactccctcaaactctcctcctcccaggctaacaaacgccgtctccactcccacgccc 13448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 20129342 - 20129259
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaacc 264  Q
    |||||||||||| |||||||||||| |  |||||||||  ||||| |||||||||||| || |  |||||||| | ||||||||    
T  20129342 cctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgccattaaacgacgacgccacaacc 20129259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 32821862 - 32821912
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||| ||| |||||||||| ||||||||| | ||||||||    
T  32821862 acttatatcaaatgaatttaaaataactttgactatttttaagtaaatttt 32821912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 35780708 - 35780798
Alignment:
Q  156 caacaccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaaca 246  Q
    |||| ||||||||| |||  ||||||||| |||| || || ||  |||||||  |||||||||| ||||| ||||||||||||||| ||||    
T  35780708 caactccatttatcaatagtattaacctgtaaaataaagtgatccaataatagtgaacactccctcacactctcctcctcccaagccaaca 35780798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 41691640 - 41691606
Alignment:
Q  226 actcctcctcccaagcaaacaaacgacgtctccac 260  Q
    ||||||||||||||||||||| |||||||||||||    
T  41691640 actcctcctcccaagcaaacagacgacgtctccac 41691606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 25320006 - 25320095
Alignment:
Q  161 ccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 250  Q
    ||||||||| | || ||||||||| | ||||| |||||| || || |  |||||||||| ||||| ||||||||||||||| || |||||    
T  25320006 ccatttatcaaaaatattaacctgtagaacaaagttatgcaacaacagtgaacactccctcacactctcctcctcccaagccaataaacg 25320095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 31801097 - 31801056
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    |||||| | ||||||||||||||||| |||||||||||||||    
T  31801097 acttatgttaaatgagtttgaaataatttttactatttttga 31801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 23447588 - 23447640
Alignment:
Q  186 aaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    ||||||| ||||||||||||||  | |||||||| ||||| ||||||||||||    
T  23447588 aaaacaaagttatgtaataataatgcacactccctcacactctcctcctccca 23447640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 45237983 - 45238023
Alignment:
Q  326 aatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||| |||||||||||||||||||||||||| ||| ||||    
T  45237983 aatgaatttgaaataacttttactatttttgagtaattttt 45238023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 94 - 318
Target Start/End: Complemental strand, 355900 - 355676
Alignment:
Q  94 cattattagttacaaaacgatacgcctcccgtacattgtaaccatgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 193  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  355900 cattattagtaacaaatcgatacgcctcccgtacagtgtaaccatgagtagtatcaagtgcccaacaccatttatcagtaacattaacctgcaaaacaac 355801  T
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 293  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  355800 gttaagtaataatatggagcactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccctaccatcctcctcccacccctcc 355701  T
Q  294 ctctccatctccgccaccttacact 318  Q
    |||||||||||||||||| ||||||    
T  355700 ctctccatctccgccaccgtacact 355676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 356035 - 355958
Alignment:
Q  10 gaagaatattgcatcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaatgaaacct 87  Q
    |||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  356035 gaagaatattacgacgtaaaagattgtcacgagtcggaagtcaattacgaagcaaacgccaaacaaacaacgaaacct 355958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 33891889 - 33891939
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33891889 acttatatcaaatgagtttgaaataacttttactatttttgagtaaatttt 33891939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 41670333 - 41670383
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  41670333 acttatatcaaatgagtttgaaataacttctactatttttgagtaaatttt 41670383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 6201247 - 6201206
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6201247 acttatatcaaatgagtttgaaataacttttactatttttga 6201206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 14660318 - 14660269
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  14660318 acttatatcaaatgagtttaaaataacttttactaattttgaataaattt 14660269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 16751145 - 16751100
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  16751145 atatcaaatgagtttgaaataacttttactattttagaataaattt 16751100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 20213773 - 20213885
Alignment:
Q  176 attaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgacca 275  Q
    |||||||||||| |||| ||||||||| ||    |||||||||| || || ||||||||||||||| |||||| | |||||||||| ||||| ||||||     
T  20213773 attaacctgcaacacaatgttatgtaacaaagcagaacactccctcagactctcctcctcccaagctaacaaatggcgtctccacacccacg-ccgaccc 20213871  T
Q  276 tccacctcccaccc 289  Q
    ||| ||||||||||    
T  20213872 tcctcctcccaccc 20213885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 41398987 - 41398938
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  41398987 acttatatcaaatgagtttgaaataacttttactatttttaagtaaattt 41398938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 32493790 - 32493838
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatt 364  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  32493790 acttatatcaaataagtttgaaataacttttactatttttgagtaaatt 32493838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 5998109 - 5998158
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  5998109 acttatattaaatgagtttgaaataacttctactatttttgactaaattt 5998158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 2467996 - 2467920
Alignment:
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    ||||||||||||||  |||||||||| ||||| |||||||||| |||| |||||||| | || ||||| ||||||||    
T  2467996 gttatgtaataatagtgaacactccctcacactctcctcctccgaagctaacaaacgccttcgccacacccacgccc 2467920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 12564744 - 12564852
Alignment:
Q  162 catttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    ||||||||  || ||||||| || ||||||| ||||||||||||||  |||||||| | ||||| |||||||||||| || | ||| || |||| |||||    
T  12564744 catttatcagtagcattaacttgtaaaacaaagttatgtaataataaagaacactctctcacactctcctcctcccatgctagcaatcgtcgtcaccaca 12564843  T
Q  262 accacgccc 270  Q
     ||||||||    
T  12564844 cccacgccc 12564852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 21646912 - 21646865
Alignment:
Q  318 ttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  21646912 ttataacaaatgagtttgaaataacttatactatttttgagtaaattt 21646865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 3330911 - 3330957
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||    
T  3330911 atatcaaatggatttgaaataacttttactatttttgagtaaatttt 3330957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 32487950 - 32488016
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaa 247  Q
    ||||||||||||||||||||||||| |  || ||||||| ||||| |||||||||||| || |||||    
T  32487950 cctgcaaaacaacgttatgtaataaaacagagcactccctcacactctcctcctcccatgctaacaa 32488016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 40368954 - 40369032
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    |||||||||||| |||||||||||  |  | |||||||| |||| | ||||||||||| ||||||| ||||||||||||    
T  40368954 cctgcaaaacaatgttatgtaatagcaaaggacactccctcacagattcctcctcccacgcaaacagacgacgtctcca 40369032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 42460884 - 42460834
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||| |||||||||||||||||| || |||||||||||| ||||||||    
T  42460884 acttataacaaatgagtttgaaataatttatactatttttgagtaaatttt 42460834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 42887695 - 42887745
Alignment:
Q  315 cacttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||| ||||||||||||||||||||| |||||||||| | |||||||    
T  42887695 cacttataccaaatgagtttgaaataacttctactatttttaagtaaattt 42887745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 21200301 - 21200346
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  21200301 atatcaaatgattttgaaatgacttttactatttttgagtaaattt 21200346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 40366495 - 40366584
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    ||||||||| || |||||||| ||| | |||||| |||| ||||||||||| |||||| |||||||  | ||||||||||  ||||||||    
T  40366495 cctgcaaaataatgttatgtagtaacaaggaacattccctcacacactccttctcccaggcaaacagcccacgtctccactcccacgccc 40366584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 44602747 - 44602662
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccac 266  Q
    |||||||||||| ||||| |||||| || ||||||||||  |||| ||| |||||||| || ||||||||||  ||||||| ||||    
T  44602747 cctgcaaaacaatgttatataataaaatagaacactccctaacactctcttcctcccacgctaacaaacgacacctccacacccac 44602662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 21202401 - 21202355
Alignment:
Q  319 tatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||| |||||||| |||||||| |||||||| |||||||    
T  21202401 tatatcaaatgattttgaaatgacttttacgatttttgagtaaattt 21202355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 32918475 - 32918437
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttt 354  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  32918475 acttataccaaatgagtttgaaataacttatactatttt 32918437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 24220706 - 24220649
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    |||||||||||| |||||||||||| |  ||||||| || ||||| ||||||||||||    
T  24220706 cctgcaaaacaatgttatgtaataacacagaacactacctcacactctcctcctccca 24220649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 39952376 - 39952425
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||| |||||||||| || |||||||||||| |||||||    
T  39952376 acttataccaaatgaatttgaaataagttctactatttttgagtaaattt 39952425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 94 - 310
Target Start/End: Original strand, 10460297 - 10460513
Alignment:
Q  94 cattattagttacaaaacgatacgcctcccgtacattgtaaccatgtgaaggatcaagtgcccaacaccatttatcgataacattaacctgcaaaacaac 193  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||||| || |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  10460297 cattattagtaacaaaacgatacgcctcccgtgcagtgtagccatgtgtagtatcaagtgcccaacaccacttatcagtaacattaacctgcaaaacaac 10460396  T
Q  194 gttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctcc 293  Q
    ||||||||||||||| || ||||||||||||| |||||||||||| || |||||||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  10460397 gttatgtaataatattgagcactcccgcacactctcctcctcccatgctaacaaacgacgtctccacaaccccaccctaccatcctcctcccacccctcc 10460496  T
Q  294 ctctccatctccgccac 310  Q
    | |||||||||||||||    
T  10460497 ccctccatctccgccac 10460513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 10460162 - 10460239
Alignment:
Q  10 gaagaatattgcatcgtaaaagattgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaacaatgaaacct 87  Q
    |||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||    
T  10460162 gaagaatatttcggcgtaaaagattgtcacgaatcggaagtcgattacgaagcaaacgccaaacgaacagcgaaacct 10460239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 5841576 - 5841625
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5841576 acttatatcaaatgagtttgaaataacttttactatttttgagtaaattt 5841625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 36977666 - 36977712
Alignment:
Q  319 tatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  36977666 tatattaaatgagtttgaaataacttttactatttttgaataaattt 36977712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 26244318 - 26244269
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  26244318 acttatatcaaatgaatttgaaataacttttactatttttgagtaaattt 26244269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 2068560 - 2068609
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  2068560 acttatgttaaatgagtttgaaataacttctactatttttgaataaattt 2068609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 6812819 - 6812868
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  6812819 acttataacaaatgagtttgaaataacttatactatttttgagtaaattt 6812868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 31576428 - 31576379
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  31576428 acttataccaaatgagtttgaaataacttatactatttttaaataaattt 31576379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 35286297 - 35286346
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  35286297 acttatatcaaatgagtttgaaataatttttacaatttttgagtaaattt 35286346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 865851 - 865890
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactattttt 355  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  865851 acttatattaaatgagtttgaaataacttttactattttt 865890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 9771669 - 9771626
Alignment:
Q  322 atcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  9771669 atcaaatgagtttgaaataacttttactatttttaagtaaattt 9771626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 41777490 - 41777443
Alignment:
Q  212 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  41777490 acactccctcacacactcctcctcccacgcaaacagacgacgtctcca 41777443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 394217 - 394168
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| || ||||||||| |||||||    
T  394217 acttataccaaatgagtttgaaataacttctattatttttgactaaattt 394168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 17218361 - 17218320
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  17218361 acttatatcaaatgaatttgaaataatttttactatttttga 17218320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 25824442 - 25824393
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||| |||||| |||||| ||||||||||||||||||||    
T  25824442 acttataacaaatgaatttgaattaacttatactatttttgaataaattt 25824393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 35076945 - 35076888
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    |||||||||||| |||| ||||||| || |||||||||| ||||| ||||||||||||    
T  35076945 cctgcaaaacaatgttacgtaataacatagaacactccctcacactctcctcctccca 35076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 42522372 - 42522421
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||    
T  42522372 acttatatcaaatgagtatgaaataacttctactatttttaactaaattt 42522421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 21824534 - 21824454
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    |||||||||||| ||||||||| ||  ||  ||| |||| |||||  ||||||||||||||||| |||||||| |||||||    
T  21824534 cctgcaaaacaatgttatgtaacaaattgacacattccctcacaccatcctcctcccaagcaaataaacgacgcctccaca 21824454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 42333570 - 42333622
Alignment:
Q  234 tcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctccca 286  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| ||||||||    
T  42333570 tcccaggcaaacaaccgacgcctccacaaccacgccccaccatcaacctccca 42333622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 43464835 - 43464748
Alignment:
Q  179 aacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccac 266  Q
    |||||||||||||| ||| || | ||| |  |||||||||| ||||| |||||||||||| || ||||||||||| | ||||| ||||    
T  43464835 aacctgcaaaacaatgttgtgaagtaacactgaacactccctcacactctcctcctcccacgccaacaaacgacgacgccacacccac 43464748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 26369745 - 26369787
Alignment:
Q  211 aacactcccgcacacactcctcctcccaagcaaacaaacgacg 253  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  26369745 aacactcccgcaccttctcctcctcccaagcaaacaaacgacg 26369787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 11961716 - 11961679
Alignment:
Q  328 tgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||| || |||||||||||||||||    
T  11961716 tgagtttgaaataacttctattatttttgaataaattt 11961679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 15834692 - 15834651
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  15834692 acttataacaaatgaatttgaaataacttatactatttttga 15834651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 29812969 - 29812880
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||||||| ||||| ||| |  ||  ||||||||| ||||| |||||||||||| || |||| ||| |||||||| | ||||||||    
T  29812969 cctgcaaaacaatgttatttaaaagaatataacactccctcacactctcctcctcccatgctaacagacggcgtctccatacccacgccc 29812880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 8057315 - 8057363
Alignment:
Q  318 ttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||| |||| ||||||||||||||| || ||||||||| ||||||||    
T  8057315 ttatattaaataagtttgaaataacttctattatttttgattaaatttt 8057363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 32270262 - 32270234
Alignment:
Q  316 acttatatcaaatgagtttgaaataactt 344  Q
    |||||||||||||||||||||||||||||    
T  32270262 acttatatcaaatgagtttgaaataactt 32270234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 33335540 - 33335655
Alignment:
Q  173 aacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccga 272  Q
    ||||||| ||||||| |||| |||||||||||| ||||| ||||||| ||| | ||||||||| || ||||||| |||||||||||||| |||||||  |    
T  33335540 aacattatcctgcaagacaatgttatgtaataaaatggagcactccctcacgcgctcctcctctcacgcaaacagacgacgtctccacacccacgcctca 33335639  T
Q  273 ccatccacctcccacc 288  Q
    ||||| | ||||||||    
T  33335640 ccatctatctcccacc 33335655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 1233450 - 1233355
Alignment:
Q  155 ccaacaccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 250  Q
    ||||| ||||||||| |||  ||||||||| ||||||| |||||| |||||||  |||||||||| ||||| ||||||||||||||| ||||||||    
T  1233450 ccaactccatttatcaatagtattaacctgtaaaacaaagttatgcaataatagtgaacactccctcacactctcctcctcccaagccaacaaacg 1233355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 42830660 - 42830577
Alignment:
Q  183 tgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccac 266  Q
    |||||||||||||||||||||||||  ||||||||||| ||||  |||||||||||||| ||||| || |||||||||| ||||    
T  42830660 tgcaaaacaacgttatgtaataataaagaacactcccgaacactatcctcctcccaagctaacaatcggcgtctccacacccac 42830577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 46552614 - 46552564
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46552614 acttatatcaaatgagtttgaaaaaacttttactatttttgaataaatttt 46552564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 21224268 - 21224317
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21224268 acttatatcaaatgagtttgaaataacttttactatttttgagtaaattt 21224317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 30953597 - 30953711
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccg 271  Q
    |||||| |||||||||||||| ||||||||| | |  ||| ||||||| |||||  |||||||||||||| ||||||||  ||||||||  ||||||||     
T  30953597 taacatcaacctgcaaaacaatgttatgtaacacttcggagcactccctcacactttcctcctcccaagctaacaaacggtgtctccacttccacgccct 30953696  T
Q  272 accatccacctccca 286  Q
     || |||||||||||    
T  30953697 tccctccacctccca 30953711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 30969409 - 30969523
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccg 271  Q
    |||||| |||||||||||||| ||||||||| | |  ||| ||||||| |||||  |||||||||||||| ||||||||  ||||||||  ||||||||     
T  30969409 taacatcaacctgcaaaacaatgttatgtaacacttcggagcactccctcacactttcctcctcccaagctaacaaacggtgtctccacttccacgccct 30969508  T
Q  272 accatccacctccca 286  Q
     || |||||||||||    
T  30969509 tccctccacctccca 30969523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 36734926 - 36734877
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  36734926 acttataacaaatgagtttgaaataacttatactatttttgaataaattt 36734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 35273317 - 35273403
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacg 267  Q
    |||||||||||| ||||||||||||||    |||||||| ||| |  |||||||||||||| ||||| ||||||||||||| |||||    
T  35273317 cctgcaaaacaatgttatgtaataatactacacactccctcacgctttcctcctcccaagctaacaaccgacgtctccacacccacg 35273403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 35924731 - 35924681
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  35924731 acttatatcaaatgagtttaaaataacttctactatttttgactaaatttt 35924681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 299423 - 299320
Alignment:
Q  183 tgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacct 282  Q
    |||||||||| ||||| ||| | |  ||||||||||| |||||  |||||||||||||| ||||| || | |||||||| |||||||| |||  ||||||    
T  299423 tgcaaaacaatgttatttaacacttcggaacactccctcacactttcctcctcccaagctaacaaccgccatctccacatccacgccctaccgcccacct 299324  T
Q  283 ccca 286  Q
    ||||    
T  299323 ccca 299320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 12113541 - 12113583
Alignment:
Q  323 tcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  12113541 tcaaatgagtttgaaataacttatactatttttgagtaaattt 12113583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 17578693 - 17578644
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| |||||||    
T  17578693 acttataccaaatgaatttgaaataacttctactatttttgagtaaattt 17578644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 28946746 - 28946839
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgacc 274  Q
    |||| ||||||| |||||||||||| || ||||| | ||| |||| || ||||||||| || |||| |||||||||||| | ||||||| ||||    
T  28946746 cctgtaaaacaatgttatgtaataaaatagaacatttccgaacactcttctcctcccacgctaacagacgacgtctccatacccacgccagacc 28946839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 36731124 - 36731193
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 250  Q
    |||||||||||| ||| |||||||| |  |||||||||| ||||| ||||||||||||||| || |||||    
T  36731124 cctgcaaaacaatgttctgtaataaaacagaacactccctcacaccctcctcctcccaagctaataaacg 36731193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 39993391 - 39993440
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||    
T  39993391 acttatatcaaatgagtatgaaataacttctactatttttaagtaaattt 39993440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 47772513 - 47772590
Alignment:
Q  161 ccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    |||||||||  || |||||||||| ||||||| ||||||||||||||  |||||||  | ||||| ||||||||||||    
T  47772513 ccatttatcagtagcattaacctgtaaaacaaagttatgtaataatagagaacactttctcacactctcctcctccca 47772590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 41118627 - 41118667
Alignment:
Q  323 tcaaatgagtttgaaataacttttactatttttgaataaat 363  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  41118627 tcaaatgagtttgaaataacttctactatttttgagtaaat 41118667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 21736917 - 21736866
Alignment:
Q  210 gaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    |||||||||| ||||| ||||||||||||||||||||| || || |||||||    
T  21736917 gaacactccctcacactctcctcctcccaagcaaacaaccggcgcctccaca 21736866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 10437241 - 10437283
Alignment:
Q  211 aacactcccgcacacactcctcctcccaagcaaacaaacgacg 253  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  10437241 aacactcccgcaccttctcctcctcccaagcaaacaaacgacg 10437283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 16176366 - 16176325
Alignment:
Q  161 ccatttatcgataacattaacctgcaaaacaacgttatgtaa 202  Q
    ||||||||||   |||||||||||||||||||||||||||||    
T  16176366 ccatttatcggagacattaacctgcaaaacaacgttatgtaa 16176325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 30434165 - 30434214
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||||||||||| || || |||||| |||||||    
T  30434165 acttataacaaatgagtttgaaataacttatattacttttgagtaaattt 30434214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 30738605 - 30738556
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||| ||||||||||||| |||  || ||||||||||||||||||||    
T  30738605 acttataccaaatgagtttgacatagtttctactatttttgaataaattt 30738556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 45406331 - 45406282
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||| ||||||||||||||| ||| |||||| | |||||||    
T  45406331 acttatatcaaataagtttgaaataacttctaccattttttattaaattt 45406282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 12950332 - 12950392
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagc 241  Q
    |||||||||||| |||||| | ||| |  |||||||||| ||||| |||||||||||||||    
T  12950332 cctgcaaaacaatgttatgaagtaaaacagaacactccctcacactctcctcctcccaagc 12950392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 21891945 - 21891985
Alignment:
Q  323 tcaaatgagtttgaaataacttttactatttttgaataaat 363  Q
    ||||||||||||||||||||||||| ||| ||| |||||||    
T  21891945 tcaaatgagtttgaaataacttttattatgttttaataaat 21891985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 24475449 - 24475413
Alignment:
Q  329 gagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  24475449 gagtttgaaataacttctactatttttgaatatattt 24475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 41225965 - 41225917
Alignment:
Q  213 cactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    ||||||| |||  ||||||||||||| |||||||||||| |||||||||    
T  41225965 cactccctcaccaactcctcctcccatgcaaacaaacgatgtctccaca 41225917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 49194178 - 49194291
Alignment:
Q  146 atcaagtgcccaacaccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaac 245  Q
    |||||||||||| | ||||  |||  ||||||||||||| ||||||| ||||||||||||||  |||||||||| ||||| ||||||||||||  | | |    
T  49194178 atcaagtgcccatctccatgaatcagtaacattaacctgtaaaacaaagttatgtaataataatgaacactccctcacactctcctcctcccatactagc 49194277  T
Q  246 aaacgacgtctcca 259  Q
    ||||||||||||||    
T  49194278 aaacgacgtctcca 49194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 12377463 - 12377552
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||||||| |||||||||||  |  |||||||||| |||| | ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12377463 cctgcaaaacaatgttatgtaatagcaaagaacactccctcacagattcctcctcccacgcaaacaaacggcgtctccacacccacgccc 12377552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 24234593 - 24234543
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  24234593 acttatatcaaatgagtttgaaataacttctactatttttgagtaaatttt 24234543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 47606895 - 47606945
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  47606895 acttatatcaaatgagtttgaaataacttttactattttttagtaaatttt 47606945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 24968574 - 24968529
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  24968574 atatcaaatgagtttaaaataacttttactatttttgaataaattt 24968529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 35321395 - 35321346
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  35321395 acttatatcaaatgagtttaaaataacttttactatttttgagtaaattt 35321346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 50680073 - 50680122
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  50680073 acttatatcaaatgagtttgaaataatttttactatttttgagtaaattt 50680122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 17535467 - 17535549
Alignment:
Q  165 ttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaa 247  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| || ||||||| |||||  ||||| ||||| || |||||    
T  17535467 ttatcaataacattaacctccaaaacaatgttatgtaataatattgagcactccctcacactttcctcatcccacgctaacaa 17535549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 25057333 - 25057431
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||  ||||||||| || |||||||||||| |  |||||||||||  |||  |||||||||||||| ||||| || |||||||||| ||||||||    
T  25057333 taacattttcctgcaaaataatgttatgtaataaaagagaacactcccgagcactttcctcctcccaagctaacaatcggcgtctccacacccacgccc 25057431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 37874785 - 37874834
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  37874785 acttatatcaaataagtttgaaataacttttactatatttgagtaaattt 37874834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 50609439 - 50609532
Alignment:
Q  175 cattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgc 268  Q
    ||||| |||||||||||| |||||| ||||| |  |||||||||| |||||  ||||||||||| || |||||||| |||| ||||| ||||||    
T  50609439 cattatcctgcaaaacaatgttatgaaataaaactgaacactccctcacactttcctcctcccaggccaacaaacgtcgtcgccacacccacgc 50609532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 54846168 - 54846249
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaa 262  Q
    |||||||||||| |||||||| ||| |  |||||||||| ||||| ||||||||||||||| ||||| ||||| | ||||||    
T  54846168 cctgcaaaacaatgttatgtagtaaaacagaacactccctcacactctcctcctcccaagccaacaatcgacgacgccacaa 54846249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 46218768 - 46218687
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaa 262  Q
    |||||||||||| |||||||||||| |  |||||||||| ||||  ||||||||||||||| |  |||||||| | ||||||    
T  46218768 cctgcaaaacaatgttatgtaataacacagaacactccctcacattctcctcctcccaagccagtaaacgacgacgccacaa 46218687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 42397514 - 42397561
Alignment:
Q  212 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    |||||||| |||||  ||||||||||||||||| ||||||||||||||    
T  42397514 acactccctcacaccttcctcctcccaagcaaataaacgacgtctcca 42397561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 180791 - 180837
Alignment:
Q  320 atatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||||||||||||| ||||||| |||| ||||||| ||||||||    
T  180791 atatcaaatgagtttgatataacttctactctttttgagtaaatttt 180837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 16304339 - 16304289
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    ||||||| |||||||| ||||||||||||  ||||||||||| ||||||||    
T  16304339 acttataacaaatgagcttgaaataacttcaactatttttgagtaaatttt 16304289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 47591265 - 47591307
Alignment:
Q  211 aacactcccgcacacactcctcctcccaagcaaacaaacgacg 253  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  47591265 aacactcccgcaccttctcctcctcccaagcaaacaaacgacg 47591307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 25142106 - 25142065
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttga 357  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  25142106 acttataccaaatgagtttgaaaaaacttctactatttttga 25142065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 40851471 - 40851366
Alignment:
Q  213 cactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctcccacccctccctctccatctccgccacct 312  Q
    ||||||| || ||||||||| ||||| ||||||||||| ||||| |||  | |||||| ||| || ||| ||||||||  ||||  ||| || |||||||    
T  40851471 cactccctcagacactcctcttcccacgcaaacaaacgtcgtcttcactccaacgccccaccgtcaaccgcccaccccctcctccacatgtctgccacct 40851372  T
Q  313 tacact 318  Q
    ||||||    
T  40851371 tacact 40851366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 7447023 - 7447055
Alignment:
Q  228 tcctcctcccaagcaaacaaacgacgtctccac 260  Q
    ||||||||||| |||||||||||||||||||||    
T  7447023 tcctcctcccaggcaaacaaacgacgtctccac 7447055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 12832994 - 12832922
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacg 253  Q
    |||||||||||| ||||| ||||||  | | |||||||| ||||| |||||||||||| || ||||| |||||    
T  12832994 cctgcaaaacaatgttatctaataaagttgcacactccctcacactctcctcctcccacgccaacaaccgacg 12832922  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 14454686 - 14454770
Alignment:
Q  176 attaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccac 260  Q
    |||| |||||||||||| ||||||||| ||  ||  ||| |||| ||| |  ||||||||||||||||| ||||| |||||||||    
T  14454686 attatcctgcaaaacaatgttatgtaacaagttgacacaatccctcacgccttcctcctcccaagcaaataaacggcgtctccac 14454770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 39867593 - 39867545
Alignment:
Q  212 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctccac 260  Q
    |||||||| |||||  |||||||||||||||||||| ||||||| ||||    
T  39867593 acactccctcacactatcctcctcccaagcaaacaaccgacgtcgccac 39867545  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 8770889 - 8770750
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgcccg 271  Q
    |||||| |||||||||||||| |||||||||||   |||| ||||||| ||||| |||||||||||| || ||||| ||||||||||||  ||||||||     
T  8770889 taacatcaacctgcaaaacaatgttatgtaatacattggagcactccctcacactctcctcctcccaggctaacaagcgacgtctccactcccacgccct 8770790  T
Q  272 accatccacctcccacccctccctctccatctccgccacc 311  Q
      | ||||||||||| ||    |||||||||||| |||||    
T  8770789 ttcctccacctcccaacctaatctctccatctcctccacc 8770750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 17798655 - 17798750
Alignment:
Q  155 ccaacaccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 250  Q
    ||||| ||||||||| |||| ||||||||| ||| ||| |||||| |||||||  |||||||||| ||||| ||||||||||||||| ||||||||    
T  17798655 ccaactccatttatcaataatattaacctgtaaagcaaagttatgcaataatagtgaacactccctcacactctcctcctcccaagccaacaaacg 17798750  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 1727837 - 1727739
Alignment:
Q  172 taacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 270  Q
    |||||||| |||||||||||||||||||||||||| | || ||||||| |||||  ||||||||||| || ||||| | ||||||||||| ||| ||||    
T  1727837 taacattatcctgcaaaacaacgttatgtaataatgttgagcactccctcacactttcctcctcccatgctaacaacctacgtctccacacccatgccc 1727739  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 13413272 - 13413360
Alignment:
Q  173 aacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    |||||||||||  ||||||| ||||||||||||||  || ||||||| ||||| |||||||||||| || | |||||||||||||||||    
T  13413272 aacattaacctataaaacaaagttatgtaataataatgagcactccctcacactctcctcctcccatgctagcaaacgacgtctccaca 13413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 21381655 - 21381704
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  21381655 acttatatgaaatgagtttgaaataacttttactatttttgattaaattt 21381704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 21955454 - 21955407
Alignment:
Q  318 ttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  21955454 ttatatcaattgagtttgaaataacttttattatttttgaataaattt 21955407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 28590929 - 28590869
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagc 241  Q
    |||||||||||||||||||||||||  | |||||||||| |||||  ||||||||||||||    
T  28590929 cctgcaaaacaacgttatgtaataaatttgaacactcccccacactatcctcctcccaagc 28590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 8234575 - 8234622
Alignment:
Q  212 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  8234575 acactccctcacactctcctcctcccaagcatacaaacgacgtctcca 8234622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 13246908 - 13246957
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||| ||||||| | |||||||||||| |||||||    
T  13246908 acttatatcaaatgagtttaaaataacatctactatttttgagtaaattt 13246957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 18489030 - 18488945
Alignment:
Q  176 attaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    |||| |||||||||||| ||||||||| ||  ||  ||| |||| |||||  ||||||||||||||||| |||||||| |||||||    
T  18489030 attatcctgcaaaacaatgttatgtaacaaattgacacagtccctcacaccatcctcctcccaagcaaataaacgacgcctccaca 18488945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 29047645 - 29047601
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataa 361  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||    
T  29047645 acttatat-aaatgagtttgaaataacttttacaatttttgaataa 29047601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 12650321 - 12650357
Alignment:
Q  317 cttatatcaaatgagtttgaaataacttttactattt 353  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12650321 cttatatcaaatgagtttgaaataacttctactattt 12650357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 16478376 - 16478456
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctccaca 261  Q
    |||||||||||| ||||||||| ||  ||  ||| |||| |||||  ||||||||||||||||| |||||||| |||||||    
T  16478376 cctgcaaaacaatgttatgtaacaaattgacacattccctcacaccatcctcctcccaagcaaataaacgacgcctccaca 16478456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 2013529 - 2013458
Alignment:
Q  167 atcgataacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctccca 238  Q
    ||||| || |||| |||||||||||||||||||||| || |  |||||||||| || || ||||||||||||    
T  2013529 atcgaaaatattatcctgcaaaacaacgttatgtaacaaaacagaacactccctcatactctcctcctccca 2013458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 347
Target Start/End: Original strand, 13193072 - 13193103
Alignment:
Q  316 acttatatcaaatgagtttgaaataactttta 347  Q
    ||||||||||||||||||||||||||||||||    
T  13193072 acttatatcaaatgagtttgaaataactttta 13193103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 14392846 - 14392912
Alignment:
Q  181 cctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaa 247  Q
    ||||||||||||||||||| | ||| |  |||||||||| ||||| |||||||||||| || |||||    
T  14392846 cctgcaaaacaacgttatgaagtaacacagaacactccctcacactctcctcctcccatgctaacaa 14392912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 30792785 - 30792735
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||  |||||||||||||||||||| |||||||||| | ||||||||    
T  30792785 acttatactaaatgagtttgaaataacttctactatttttaactaaatttt 30792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 31293169 - 31293124
Alignment:
Q  33 ttgtcacgagtcggaagtcgattacgaagcaaacgccaaacaaaca 78  Q
    ||||||||||||||||||| ||| ||||| |||||||| |||||||    
T  31293169 ttgtcacgagtcggaagtctattgcgaagtaaacgccagacaaaca 31293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 2854890 - 2854970
Alignment:
Q  179 aacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    ||||||||||||||||||||  | |||  ||  |||||||| || || ||||||||||||||| ||||| || ||||||||    
T  2854890 aacctgcaaaacaacgttatccagtaaagtgatacactccctcatactctcctcctcccaagctaacaaccgccgtctcca 2854970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 7793078 - 7793038
Alignment:
Q  325 aaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  7793078 aaatgagtttgaaattacttctactatttttgagtaaattt 7793038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 33754049 - 33754017
Alignment:
Q  228 tcctcctcccaagcaaacaaacgacgtctccac 260  Q
    ||||||||||| |||||||||||||||||||||    
T  33754049 tcctcctcccaggcaaacaaacgacgtctccac 33754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 46255 - 46155
Alignment:
Q  173 aacattaacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctc---ctcccaagcaaacaaacgacgtctccacaaccacgcc 269  Q
    ||||||| ||||||||||||| ||||||||||| || ||||| |||| |||| |||||||   |||||| |||||||||||||  ||||||| | |||||    
T  46255 aacattatcctgcaaaacaacattatgtaataaaatagaacattccctcacagactcctcctcctcccacgcaaacaaacgacacctccacatcgacgcc 46156  T
Q  270 c 270  Q
    |    
T  46155 c 46155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 42046 - 41997
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  42046 acttatatcaaatgagtttgaaataatctttactatttttgagtaaattt 41997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 116912 - 116962
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaatttt 366  Q
    |||||||| ||||||||||||||||| |||||| |||||||| ||||||||    
T  116912 acttatatgaaatgagtttgaaataaattttaccatttttgagtaaatttt 116962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 217774 - 217714
Alignment:
Q  159 caccatttatcgataacattaacctgcaaaacaacgttatgtaataatatggaacactccc 219  Q
    |||||||||||| |||||  | ||||||||| |||||||||||||||||  ||||||||||    
T  217774 caccatttatcgttaacagaatcctgcaaaataacgttatgtaataataaagaacactccc 217714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 160799 - 160751
Alignment:
Q  316 acttatatcaaatgagtttgaaataacttttactatttttgaataaattt 365  Q
    |||||||| |||| ||||||||||||| |||||||||||||| |||||||    
T  160799 acttatatgaaataagtttgaaataac-tttactatttttgagtaaattt 160751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 42968 - 43048
Alignment:
Q  179 aacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    ||||||||||||||||||||  | ||| |||  |||||||| || || || |||||||||||| ||||| || ||||||||    
T  42968 aacctgcaaaacaacgttatccagtaaaatgatacactccctcatactcttctcctcccaagctaacaaccgtcgtctcca 43048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 46888 - 46968
Alignment:
Q  179 aacctgcaaaacaacgttatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacgacgtctcca 259  Q
    ||||||||||||||||||||  | ||| |||  |||||||| || || || |||||||||||| ||||| || ||||||||    
T  46888 aacctgcaaaacaacgttatccagtaaaatgatacactccctcatactcttctcctcccaagctaacaaccgtcgtctcca 46968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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