View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20012_low_6 (Length: 417)
Name: NF20012_low_6
Description: NF20012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20012_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 44996406 - 44996803
Alignment:
| Q |
1 |
ggttgtgaccctgacaactatacttaccgggtcttaattgatggcttttgcaaaacaggaaatgttactcaaggatacaaatttctattggaaaatattg |
100 |
Q |
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| T |
44996406 |
ggttgtgaccctgacaactatacttaccgggtcttaattgatggcttttgcaaaacaggaaatgttaatcaaggatacaaatttctattggaaaatattg |
44996505 |
T |
|
| Q |
101 |
aaaaaggatttattccatctctgacaacatttggtcgggttttaaattgtctttgcgtggagcacaaggttcaagaagcagttggtatcatccaccttat |
200 |
Q |
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| T |
44996506 |
aaaaaggatttattccatctctgacaacatttggtcgggttttaaattgtctttgcgtggagcacaaggttcaagaagcagttggtatcatccaccttat |
44996605 |
T |
|
| Q |
201 |
ggtacagaaggacattgtcccagatactgtaaatacaatttttgaagctgataaaaaggtggtagcagcaccgaagattgttgtagaacatttgttgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44996606 |
ggtacagaaggacattgtcccagatactgtaaatacaatttttgaagctgataaaaaggtggtagcagcacctaagattgttgtagaacatttgttgaaa |
44996705 |
T |
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| Q |
301 |
aagggtcatataacttatcatgcctacgaattcttgtatgatggtattagagataaaaagatacttaagaaaaaacatccaaactggaattctcttcg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996706 |
aagggtcatataacttatcatgcctacgaattcttgtatgatggtgttagagataaaaagatacttaagaaaaaacatccaaactggaattctcttcg |
44996803 |
T |
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